Rorug02G0496600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019778
Physical Location & Seq
Reverse (-)
62825491 .. 62827648
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496600.1

Sequence Viewer

Length: 726 bp
ATGGGCCGAAAGGATACAGCCGTGGAAGAAGAAGTTAGATATCAGTTTAGTAGTGTCATTTTGCACTACAAGGAGTCATTCATATACAAGACAATGCATAAGGTAATTCATGAAATTCTTCTCTTTAGAGTTTCACCCTTAACATTTGAACTCAAGGCTACTTTGAAATTGGCAAGGTTCCTTTGCAGCCTTTTCACGTCTTCAGGTACCTTAGAATGGTGCTGTAATCGATTTTCCGAGTTTCAAGCTTTGTGCATGTGCACTGGTGGTATAAGCATTCACAGTGAGGAAGAGGAAAGCTTCAGAGTCACTCTTCTCATTGAAGATGAGACTGATCAAGCACATGCAGTCTTAATGGGCAAAGAAGCAGAAGAAATCTGTGGAATCTCATGCGAGGACTTGATTATCAAGAAAAACTGCAAAAACCAAAGGATCATACCACAAGAAATTCTTCAATTAGAAGGACAGATCAAGCTGCTGAAATTGAAACCAGGAACAAAAAGAGATTTCCTTATAAAGGGGATATACGAAGATGTTCACAAGTTCACACCAACCCAAGATATCGAACCAACAACTTCCACGCCAAATAAGAAAATATTTGAGAAGAAGAGGAAGGAATTGTTCAAAGCAAAACCAAGCAAGAATCCAAAAAGTGACAACTTTGAACCATCAGATCAGACCAGCGCAAATACATCGGCTCAATCCGACACAGAAGACCTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.63

Weight (kDa)

6.13

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019778)

Species Orthologous Gene IDs
malus_domestica MD17G1080000.v1.1
pyrus_communis pycom09g01550
rosa_chinensis RchiOBHm_Chr2g0162341
rosa_roxburghii Rroxscaffold_2G00088010
rosa_rugosa Rorug02G0496600
rosa_samantha Rh2DG585700
rosa_wichuraiana Rw2G046590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 2 cut(s) 114, 447
AcuI CTGAAG 2 cut(s) 186, 286
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 216, 517
AgsI TTSAA 8 cut(s) 149, 166, 245, 323, 455, 487, 625, 665
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 3 cut(s) 248, 300, 475
AluI AGCT 3 cut(s) 248, 300, 475
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 259
AlwI GGATC 1 cut(s) 440
AoxI GGCC 1 cut(s) 4
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 186, 475
ApoI RAATTY 2 cut(s) 114, 447
Asp700I GAANNNNTTC 3 cut(s) 117, 450, 534
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 263
BaeI ACNNNNGTAYC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 192, 720
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 198, 462
BccI CCATC 1 cut(s) 676
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 675, 709
BciT130I CCWGG 1 cut(s) 492
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 724
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 2 cut(s) 187, 476
BlsI GCNGC 2 cut(s) 188, 477
Bme1390I CCNGG 1 cut(s) 492
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 179, 208
BmrFI CCNGG 1 cut(s) 492
BpiI GAAGAC 2 cut(s) 192, 720
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 517
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 216, 517
BseNI ACTGG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 198, 462
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 216, 517
BsmAI GTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 4 cut(s) 334, 432, 468, 673
BspANI GGCC 1 cut(s) 6
BspDI ATCGAT 1 cut(s) 229
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 179, 208
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 4 cut(s) 334, 432, 468, 673
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 3 cut(s) 285, 318, 602
BstDEI CTNAG 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 4 cut(s) 337, 435, 471, 676
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 4 cut(s) 334, 432, 468, 673
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 2 cut(s) 259, 347
BstSCI CCNGG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 198, 462
BstV2I GAAGAC 2 cut(s) 192, 720
Bsu15I ATCGAT 1 cut(s) 229
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 261, 289
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 229
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 110, 256, 344, 390
CviJI RGCY 8 cut(s) 6, 20, 158, 189, 248, 300, 475, 698
CviKI_1 RGCY 8 cut(s) 6, 20, 158, 189, 248, 300, 475, 698
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 211
DpnI GATC 4 cut(s) 336, 434, 470, 675
DpnII GATC 4 cut(s) 334, 432, 468, 673
Eam1104I CTCTTC 3 cut(s) 285, 318, 602
EarI CTCTTC 3 cut(s) 285, 318, 602
Eco32I GATATC 2 cut(s) 41, 562
Eco57I CTGAAG 2 cut(s) 186, 286
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 2 cut(s) 41, 562
EcoT22I ATGCAT 1 cut(s) 99
FaeI CATG 4 cut(s) 113, 259, 347, 393
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 4 cut(s) 109, 255, 343, 389
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 187, 476
Fsp4HI GCNGC 2 cut(s) 187, 476
FspBI CTAG 1 cut(s) 724
GlaI GCGC 1 cut(s) 685
GluI GCNGC 2 cut(s) 187, 476
HaeIII GGCC 1 cut(s) 6
HhaI GCGC 1 cut(s) 686
Hin1II CATG 4 cut(s) 113, 259, 347, 393
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HindIII AAGCTT 2 cut(s) 246, 298
HinfI GANTC 4 cut(s) 74, 306, 384, 643
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 261, 538, 546
Hpy188I TCNGA 5 cut(s) 238, 305, 673, 678, 706
Hpy188III TCNNGA 2 cut(s) 110, 409
Hpy8I GTNNAC 3 cut(s) 261, 538, 546
HpyAV CCTTC 2 cut(s) 455, 607
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 7 cut(s) 64, 97, 186, 255, 261, 347, 420
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 4 cut(s) 113, 259, 347, 393
HspAI GCGC 1 cut(s) 684
KpnI GGTACC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 334, 432, 468, 673
LpnPI CCDG 5 cut(s) 189, 249, 477, 504, 694
Lsp1109I GCAGC 2 cut(s) 198, 462
MaeI CTAG 1 cut(s) 724
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 307, 653
MalI GATC 4 cut(s) 336, 434, 470, 675
MboI GATC 4 cut(s) 334, 432, 468, 673
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 7 cut(s) 105, 114, 167, 447, 455, 482, 617
MlyI GAGTC 2 cut(s) 83, 315
MnlI CCTC 4 cut(s) 280, 286, 388, 603
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 3 cut(s) 117, 450, 534
MseI TTAA 2 cut(s) 140, 353
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 1 cut(s) 492
NdeII GATC 4 cut(s) 334, 432, 468, 673
NlaIII CATG 4 cut(s) 113, 259, 347, 393
NlaIV GGNNCC 2 cut(s) 179, 208
NmuCI GTSAC 2 cut(s) 307, 653
NsiI ATGCAT 1 cut(s) 99
NspI RCATGY 2 cut(s) 259, 347
PagI TCATGA 1 cut(s) 109
PctI GAATGC 1 cut(s) 276
PdmI GAANNNNTTC 3 cut(s) 117, 450, 534
PfeI GAWTC 2 cut(s) 384, 643
PkrI GCNGC 2 cut(s) 188, 477
PleI GAGTC 2 cut(s) 82, 314
PpsI GAGTC 2 cut(s) 82, 314
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 179, 208
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 140, 353
SatI GCNGC 2 cut(s) 187, 476
Sau3AI GATC 4 cut(s) 334, 432, 468, 673
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 83, 315
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 263
SetI ASST 9 cut(s) 105, 179, 200, 208, 212, 250, 302, 477, 720
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 7 cut(s) 105, 114, 167, 447, 455, 482, 617
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 724
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 229, 564
TasI AATT 7 cut(s) 105, 114, 167, 447, 455, 482, 617
TfiI GAWTC 2 cut(s) 384, 643
Tru1I TTAA 2 cut(s) 140, 353
Tru9I TTAA 2 cut(s) 140, 353
TscAI CASTG 2 cut(s) 268, 289
TseFI GTSAC 2 cut(s) 307, 653
TseI GCWGC 2 cut(s) 186, 475
Tsp45I GTSAC 2 cut(s) 307, 653
TspDTI ATGAA 3 cut(s) 70, 98, 126
TspRI CASTG 2 cut(s) 268, 289
VneI GTGCAC 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 2 cut(s) 114, 447
XceI RCATGY 2 cut(s) 259, 347
XmnI GAANNNNTTC 3 cut(s) 117, 450, 534
XspI CTAG 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.