Rw2G046590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019778
Physical Location & Seq
Forward (+)
73820505 .. 73821885
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046590.1

Sequence Viewer

Length: 282 bp
ATGGCGAAAGTCGAAGAGCCCAAGGGGACGTCCGACGACATCGCCAAGAAGAAGACGAAGAAGAGGAACCACGGCTCAACCGAGTTCTTCGTCTTCGTCGATTACCTCTTCCTCGCTGTCTTCTTCGGCTTCCTCTGCTTCATCATCTTCAAGATCCTGGCCAAAGTCCAAGTTGAAGGCTTTTGTGGATGCTGGCCTTGGTGTCGGGTTCAGATTCTGCGATTTCAAGCGCATGATGGTTTCTTGATTGAATTGATGACTTTCCAACCATTGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.84

Weight (kDa)

8.76

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019778)

Species Orthologous Gene IDs
malus_domestica MD17G1080000.v1.1
pyrus_communis pycom09g01550
rosa_chinensis RchiOBHm_Chr2g0162341
rosa_roxburghii Rroxscaffold_2G00088010
rosa_rugosa Rorug02G0496600
rosa_samantha Rh2DG585700
rosa_wichuraiana Rw2G046590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 29
AgsI TTSAA 4 cut(s) 151, 176, 227, 251
AjnI CCWGG 1 cut(s) 156
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 2 cut(s) 159, 194
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 161
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 3 cut(s) 59, 85, 112
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 179
BpiI GAAGAC 3 cut(s) 59, 85, 112
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 21, 70, 197
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 21, 70, 197
BseGI GGATG 1 cut(s) 194
BshFI GGCC 2 cut(s) 161, 196
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 2 cut(s) 161, 196
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 2 cut(s) 161, 196
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 21, 70, 197
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 21, 197
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 3 cut(s) 9, 56, 113
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV2I GAAGAC 3 cut(s) 59, 85, 112
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 161, 196
BtgI CCRYGG 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 232
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 19, 75, 129, 161, 180, 196
CviKI_1 RGCY 6 cut(s) 19, 75, 129, 161, 180, 196
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 3 cut(s) 9, 56, 113
EarI CTCTTC 3 cut(s) 9, 56, 113
Eco130I CCWWGG 2 cut(s) 21, 197
Eco24I GRGCYC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 21, 197
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 21, 197
FaeI CATG 1 cut(s) 236
FaiI YATR 1 cut(s) 234
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 232
FokI GGATG 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 21
GlaI GCGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 161, 196
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 34, 213
Hpy188III TCNNGA 2 cut(s) 151, 244
Hpy99I CGWCG 2 cut(s) 38, 101
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 143, 170, 178
LweI GCATC 1 cut(s) 179
MaeII ACGT 1 cut(s) 29
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 2 cut(s) 251, 277
MluNI TGGCCA 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 57, 116, 122, 143
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MseI TTAA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 96
PfeI GAWTC 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 21
SetI ASST 2 cut(s) 32, 108
SfaNI GCATC 1 cut(s) 179
Sse9I AATT 2 cut(s) 251, 277
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 21, 197
TaiI ACGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 12, 99
TasI AATT 2 cut(s) 251, 277
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 130
VspI ATTAAT 1 cut(s) 276
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.