Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0022418

Physical Location & Seq

Genomic Coordinates Forward (+)

15122688 .. 15123702

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1157100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATTTGGATTCTTCTAATAATGGAGGTGGGTTCTGTACTGTTGATTCTTTAATGGTAACACAACCACAACAGCAACAGCAGCATATTGGTGGTCAAAATAGCCGTATACTTCATAGCCTTGGCAGCCAAATAAATACTGGAATAAGGTATGGCATGCTGCAGAAGTCTTATGGGTTGCCAAATGGGGCTCTAAATGGTGGGTTGGGATTTGGGAACAGTTTACCAGTGGTTAATGAGTCTGGTACTTCTGAGGGCTATGTGACCTCAACACCCTATGCTAACTCTTCCAAACCATTACAACAGCACTTTGACCAACATCAGCGGCCGGTAATGCAAGGTGATAGCTATGGAATGAGCAATGCTGATTCTTTTGTGCCTGGAAACTACTATGGTGCAGCGACATCTGTTGGGTCAACGTTGAATCCTCAGAATTTGAATTCAGTCAGTTCAATACCCGTGTCCAAGGCCATCTCTCCCCTTGTAAATAGTCAGTCAAATATGCATGGTGCACAGCAAAGTGTACATGCGAAGCCTCAACAACCTGATCAATTGGAAAAAGATATTTGTAACATTGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

195

Amino Acids

20.54

Weight (kDa)

6.01

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022418)

Species	Orthologous Gene IDs
malus_domestica	MD17G1157100.v1.1
prunus_persica	Prupe.7G030400_v2.0.a1
rosa_laevigata	RLG00000020338
rosa_samantha	Rh2AG464600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	325
AclI	AACGTT	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	4, 433, 439
AfaI	GTAC	3 cut(s)	40, 247, 525
AgsI	TTSAA	4 cut(s)	424, 439, 453, 578
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw21I	GWGCWC	1 cut(s)	514
Alw44I	GTGCAC	1 cut(s)	510
AoxI	GGCC	2 cut(s)	326, 468
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	4 cut(s)	82, 126, 160, 398
ApoI	RAATTY	3 cut(s)	4, 433, 439
AsuHPI	GGTGA	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	94, 138, 147, 410
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	547
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	5 cut(s)	83, 127, 161, 326, 399
BlsI	GCNGC	5 cut(s)	84, 128, 162, 327, 400
Bme1390I	CCNGG	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	121, 465
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	145, 227
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	121, 465
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	243, 443
BseNI	ACTGG	2 cut(s)	145, 227
BseSI	GKGCMC	1 cut(s)	514
BseX3I	CGGCCG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	94, 138, 147, 410
BsgI	GTGCAG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	328, 470
BsiEI	CGRYCG	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	329
BsnI	GGCC	2 cut(s)	328, 470
Bsp1286I	GDGCHC	2 cut(s)	193, 514
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	328, 470
BspCNI	CTCAG	2 cut(s)	244, 442
BspMAI	CTGCAG	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	145, 227
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	121, 465
BssMI	GATC	1 cut(s)	547
BssNAI	GTATAC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	121, 465
Bst1107I	GTATAC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	43, 221
Bst6I	CTCTTC	1 cut(s)	292
BstAUI	TGTACA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	252, 429
BstKTI	GATC	1 cut(s)	550
BstMBI	GATC	1 cut(s)	547
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 126, 334
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	160, 530
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	94, 138, 147, 410
BstZ17I	GTATAC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	328, 470
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	39, 246, 524
CviAII	CATG	3 cut(s)	157, 506, 527
CviJI	RGCY	9 cut(s)	105, 120, 129, 191, 258, 328, 348, 470, 535
CviKI_1	RGCY	9 cut(s)	105, 120, 129, 191, 258, 328, 348, 470, 535
CviQI	GTAC	3 cut(s)	39, 246, 524
DdeI	CTNAG	2 cut(s)	252, 429
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	326
EagI	CGGCCG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	121, 465
Eco24I	GRGCYC	1 cut(s)	193
Eco52I	CGGCCG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	121, 465
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	121, 465
FaeI	CATG	3 cut(s)	160, 509, 530
FatI	CATG	3 cut(s)	156, 505, 526
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	5 cut(s)	83, 127, 161, 326, 399
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	83, 127, 161, 326, 399
GluI	GCNGC	5 cut(s)	83, 127, 161, 326, 399
HaeIII	GGCC	2 cut(s)	328, 470
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	3 cut(s)	160, 509, 530
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	5 cut(s)	11, 47, 239, 368, 424
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	5 cut(s)	110, 224, 417, 512, 524
Hpy188I	TCNGA	2 cut(s)	253, 432
Hpy8I	GTNNAC	5 cut(s)	110, 224, 417, 512, 524
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	43, 221
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	163, 337, 398, 505, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 126, 334
HpyF3I	CTNAG	2 cut(s)	252, 429
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	160, 509, 530
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	547
LpnPI	CCDG	7 cut(s)	126, 228, 240, 342, 366, 393, 558
Lsp1109I	GCAGC	4 cut(s)	94, 138, 147, 410
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	3 cut(s)	58, 262, 569
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	2 cut(s)	6, 279
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	193, 514
MluCI	AATT	4 cut(s)	4, 433, 439, 551
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	20, 247, 277, 438, 546
Mph1103I	ATGCAT	1 cut(s)	507
MseI	TTAA	2 cut(s)	53, 234
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	82, 126, 334
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	3 cut(s)	160, 509, 530
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	2 cut(s)	160, 530
PaeI	GCATGC	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	11, 47, 368, 424
PkrI	GCNGC	5 cut(s)	84, 128, 162, 327, 400
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	3 cut(s)	40, 247, 525
RsaNI	GTAC	3 cut(s)	39, 246, 524
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	53, 234
SatI	GCNGC	5 cut(s)	83, 127, 161, 326, 399
Sau3AI	GATC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	193, 514
SetI	ASST	8 cut(s)	31, 152, 269, 343, 350, 422, 547, 583
SfcI	CTRYAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	4 cut(s)	4, 433, 439, 551
SsiI	CCGC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	121, 465
TaaI	ACNGT	2 cut(s)	43, 221
TaiI	ACGT	1 cut(s)	422
TasI	AATT	4 cut(s)	4, 433, 439, 551
TatI	WGTACW	2 cut(s)	38, 523
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	4 cut(s)	11, 47, 368, 424
Tru1I	TTAA	2 cut(s)	53, 234
Tru9I	TTAA	2 cut(s)	53, 234
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	82, 126, 160, 398
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	17, 104
TspRI	CASTG	1 cut(s)	234
VneI	GTGCAC	1 cut(s)	510
XapI	RAATTY	3 cut(s)	4, 433, 439
XceI	RCATGY	2 cut(s)	160, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.