Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022418

Physical Location & Seq

Genomic Coordinates Forward (+)

63862917 .. 63864080

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTGCACAAAGAATTGCAAGCCAAATGATTCCCACTCCTGGGTTTAATAACAGTGGTAACCAATCTTACATGAATTTGGAATCCTTTAATAACGGTGGTGGGTTCTCTACTGTTGATTCTTCACTGGTAACGCAACCGCAACAGCAAAAGCAGCATATTGAAATCGTATGGGGTGTCATTTCGGATAGCTATCTGACCCCCACAGCATATGCCAATTCTTCCAAACCCTTGCAGCAACACTTTGATCCACATCAGCGGCCTGTGATGCAAGGTGATGGCTACAGCATAAACAGTTCTGATTCTTTTGGGTCTGGAAATTACTATGGTGCACCGGCTTCTGGGTCAATGATGAATCCTCAAAATTTGAATTCAGTTTGTATTGAGGCCCGCGCTGTGAACCACTTCAATACATGGTGGGGAGTAATATATGGTTATTTGGAACAATCTCGCTACAACTACAGTGACACATGGGAGGGATGCTTAACAACTATCGCAACTGGCAGTGGCACTTCCCCTGTAGTGAAAGCGGTATTCACTTTAGAAGATGCCGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

188

Amino Acids

20.33

Weight (kDa)

4.93

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022418)

Species	Orthologous Gene IDs
malus_domestica	MD17G1157100.v1.1
prunus_persica	Prupe.7G030400_v2.0.a1
rosa_laevigata	RLG00000020338
rosa_samantha	Rh2AG464600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	5 cut(s)	140, 259, 391, 530, 552
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	3 cut(s)	76, 364, 370
AfiI	CCNNNNNNNGG	3 cut(s)	41, 42, 341
AgsI	TTSAA	3 cut(s)	164, 370, 409
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw21I	GWGCWC	2 cut(s)	10, 334
Alw44I	GTGCAC	2 cut(s)	6, 330
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	260, 387
ApaLI	GTGCAC	2 cut(s)	6, 330
ApeKI	GCWGC	2 cut(s)	154, 235
ApoI	RAATTY	3 cut(s)	76, 364, 370
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	10, 334
Bbv12I	GWGCWC	2 cut(s)	10, 334
BbvI	GCAGC	2 cut(s)	166, 247
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	42
BfmI	CTRYAG	3 cut(s)	283, 460, 519
BisI	GCNGC	4 cut(s)	155, 236, 260, 552
BlsI	GCNGC	4 cut(s)	156, 237, 261, 553
Bme1390I	CCNGG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	3 cut(s)	258, 470, 538
BsaBI	GATNNNNATC	2 cut(s)	192, 252
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 42, 341
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	132, 505
Bse8I	GATNNNNATC	2 cut(s)	192, 252
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	485
BseJI	GATNNNNATC	2 cut(s)	192, 252
BseLI	CCNNNNNNNGG	3 cut(s)	41, 42, 341
BseNI	ACTGG	2 cut(s)	132, 505
BseSI	GKGCMC	2 cut(s)	10, 334
BseXI	GCAGC	2 cut(s)	166, 247
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	262, 389
BsiHKAI	GWGCWC	2 cut(s)	10, 334
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	41, 42, 341
BsnI	GGCC	2 cut(s)	262, 389
Bsp1286I	GDGCHC	2 cut(s)	10, 334
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	5 cut(s)	140, 259, 391, 530, 552
BspANI	GGCC	2 cut(s)	262, 389
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	132, 505
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	5 cut(s)	56, 98, 115, 296, 464
BstC8I	GCNNGC	2 cut(s)	22, 391
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 268, 557
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	3 cut(s)	283, 460, 519
BstSLI	GKGCMC	2 cut(s)	10, 334
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	166, 247
BsuRI	GGCC	2 cut(s)	262, 389
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	4 cut(s)	61, 125, 469, 511
Cac8I	GCNNGC	2 cut(s)	22, 391
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	3 cut(s)	73, 414, 471
CviJI	RGCY	6 cut(s)	24, 192, 262, 282, 338, 389
CviKI_1	RGCY	6 cut(s)	24, 192, 262, 282, 338, 389
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	76, 417, 474
FatI	CATG	3 cut(s)	72, 413, 470
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	155, 236, 260, 552
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	4 cut(s)	155, 236, 260, 552
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	4 cut(s)	155, 236, 260, 552
HaeIII	GGCC	2 cut(s)	262, 389
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	76, 417, 474
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HinfI	GANTC	5 cut(s)	31, 83, 119, 302, 355
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	3 cut(s)	8, 332, 400
Hpy188I	TCNGA	3 cut(s)	187, 198, 301
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	3 cut(s)	8, 332, 400
HpyCH4III	ACNGT	5 cut(s)	56, 98, 115, 296, 464
HpyCH4V	TGCA	5 cut(s)	8, 20, 235, 271, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 268, 557
Hsp92II	CATG	3 cut(s)	76, 417, 474
HspAI	GCGC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	27, 54, 113, 276, 300, 327, 348, 486, 531
Lsp1109I	GCAGC	2 cut(s)	166, 247
LweI	GCATC	3 cut(s)	258, 470, 538
MaeIII	GTNAC	3 cut(s)	59, 130, 464
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	114, 213, 557
MhlI	GDGCHC	2 cut(s)	10, 334
MluCI	AATT	6 cut(s)	15, 76, 217, 319, 364, 370
MnlI	CCTC	3 cut(s)	369, 379, 469
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	3 cut(s)	48, 90, 485
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	154, 268, 557
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	76, 417, 474
NmuCI	GTSAC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	5 cut(s)	31, 83, 119, 302, 355
PkrI	GCNGC	4 cut(s)	156, 237, 261, 553
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	48, 90, 485
SatI	GCNGC	4 cut(s)	155, 236, 260, 552
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	10, 334
SetI	ASST	2 cut(s)	194, 277
SfaNI	GCATC	3 cut(s)	258, 470, 538
SfcI	CTRYAG	3 cut(s)	283, 460, 519
Sse9I	AATT	6 cut(s)	15, 76, 217, 319, 364, 370
SsiI	CCGC	5 cut(s)	140, 259, 391, 530, 552
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	5 cut(s)	56, 98, 115, 296, 464
TasI	AATT	6 cut(s)	15, 76, 217, 319, 364, 370
TauI	GCSGC	2 cut(s)	262, 554
TfiI	GAWTC	5 cut(s)	31, 83, 119, 302, 355
Tru1I	TTAA	3 cut(s)	48, 90, 485
Tru9I	TTAA	3 cut(s)	48, 90, 485
TscAI	CASTG	4 cut(s)	61, 132, 469, 511
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	154, 235
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	89, 368
TspRI	CASTG	4 cut(s)	61, 132, 469, 511
VneI	GTGCAC	2 cut(s)	6, 330
XapI	RAATTY	3 cut(s)	76, 364, 370
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.