Rh2AG464600

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0022418
Physical Location & Seq
Forward (+)
68263777 .. 68271242
7466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG464600.1

Sequence Viewer

Length: 240 bp
ATGGACAATGGGGTGCATTTCTGCATGTGCAAAGCTCTGCAGAAACAAACGGTTTGTATTGAGGCCCGCGCTGTGAACCACTTCACTACCTGGTGGGGAGTAATATATGGTTATTTGGAACAATCTCGCTACAACTGCAGCGACACATGGGTGGGATGCTTAACAACTATAGCAACTGGCAGTGACACTTCCCCTGTAGTGAAAGCGGCATTCACATTAGAAGATGTTGCCAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.74

Weight (kDa)

5.42

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022418)

Species Orthologous Gene IDs
malus_domestica MD17G1157100.v1.1
prunus_persica Prupe.7G030400_v2.0.a1
rosa_laevigata RLG00000020338
rosa_samantha Rh2AG464600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AciI CCGC 2 cut(s) 67, 206
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 91
BfmI CTRYAG 4 cut(s) 38, 136, 168, 195
BisI GCNGC 2 cut(s) 139, 207
BlsI GCNGC 2 cut(s) 140, 208
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 65
BspACI CCGC 2 cut(s) 67, 206
BspANI GGCC 1 cut(s) 65
BspFNI CGCG 1 cut(s) 69
BspMAI CTGCAG 2 cut(s) 42, 140
BsrI ACTGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 4 cut(s) 38, 136, 168, 195
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 64
CsiI ACCWGGT 1 cut(s) 89
CviAII CATG 2 cut(s) 25, 147
CviJI RGCY 2 cut(s) 35, 65
CviKI_1 RGCY 2 cut(s) 35, 65
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 2 cut(s) 28, 150
FaiI YATR 5 cut(s) 26, 106, 108, 148, 170
FatI CATG 2 cut(s) 24, 146
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 139, 207
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 139, 207
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 139, 207
HaeIII GGCC 1 cut(s) 65
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 28, 150
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 5 cut(s) 16, 24, 30, 40, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 28, 150
HspAI GCGC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 76, 103, 162, 207
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 146
MabI ACCWGGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 1 cut(s) 233
MnlI CCTC 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 135
NlaIII CATG 2 cut(s) 28, 150
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 149
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 140, 208
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspPI GGNCC 1 cut(s) 64
PstI CTGCAG 2 cut(s) 42, 140
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 139, 207
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 91
SetI ASST 2 cut(s) 37, 92
SexAI ACCWGGT 1 cut(s) 89
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 4 cut(s) 38, 136, 168, 195
SgeI CNNG 9 cut(s) 37, 78, 80, 102, 103, 138, 159, 189, 206
SmiMI CAYNNNNRTG 1 cut(s) 149
SsiI CCGC 2 cut(s) 67, 206
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 52
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 182
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.