MD17G1185400.v1.1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014924
Physical Location & Seq
Reverse (-)
22001740 .. 22008619
6880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1185400.v1.1.491

Sequence Viewer

Length: 2517 bp
ATGGCTATGTCCTGCAAGGATGGTAATAAACATGCATTGGATAATGGCAAGTATGTGAGGTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTGTATCATGATTGCCCCAAACCCAGTTCGATTCGTCGCCAACAGCTTATTCGGGAGTGCCCGATTCTCTCCCACATCGAGCCAAAACAGATTAAGGTCTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGGAAAGAGGCTTCGCGCCTCCAAGCTGTCAACAGGAAGCTCACTGCTATGAATAAGCTACTAATGGAAGAAAATGATAGGTTGCAGAAGCAGGTGTCTCACTTGGTGTATGAAAATGGTTATTTCCGTCAGCATACCCAGGGGACAACGCTTGCAACCAAAGACACAAGTTGTGAATCGGTGGTGACGAGTGGCCAACACCATTTGACACCTCAGCATCCGCCAAGGGATGCAAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGTGCCTGCGGCCTGGTGGGTCTAGACCCTACCAGGGTTGCGGAGATCCTCAAAGATCTACCTTTGTGGTTACGTGATTGCCGTGCTGTAGATGTTTTAAATGTATTGCCTACAGCAAACGGTGGAACCATTGAGCTGCTCTACATGCAGCTCTATGCGCCGACAACTTTGGCGCCTGCCTGTGATTTCTGGCTGTTGCGCTATACTTCTATTTTAGAGGATGGCAGCCTTGTGATTTGTATGAGATCTCTGAAAAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAAATGCTGCCTAGTGGATACCTTATACGACCCTGTGAAGGGGGAGGTTCAATCATACATATTGTTGACCATATGGATTTGGAGCCTTGTAGCGTGCCTGAAGTCCTGCGCCCATTGTATGAATCATCAGCTGTCCTTGCTCAAAAGATGACAATGGCGGCTTTACGTCAGCTGAGGCAGATAGCGCATGAGGTTTCCCAATCTAATGTCACAGGTTGGGGAAGACGCCCTGCAGCTCTACGAGCATTAAGCCAAAGGCTTAGCAGGGGTTTTAATGAGGCACTTAATGGATTTACTGATGAGGGGTGGTCATTGATGGGAAATGATGGCATGGATGATGTTACTATCCTCATAAACTCGTCTCCTGACAAGTTAATGGGCTTAAACCTGTCCTTTGGTAATGGATTTCCAGCTGTCAGTAATTCCGTCTTATGTGCTAAAGCATCAATGCTGTTACAGAATGTACCCCCTGCTATACTTCTTCGGTTCCTGCGTGAGCACAGATCAGAATGGGCAGACAACAATATTGATGCTTACTCAGCTGCAGCTGTTAAAGTCGGGCCTTGTAGCTTAGCTGGGTCTCGAGTTGGAACTTTCGGAGGTCAAGTTATACTTCCCCTGGCCCACACTCTTGAGCATGAAGAGTTCTTGGAAGTCATTAAATTGGAAGGTGTTGGCCATTCTCTCGAAGATGCAATGATGCCGAGAGAAATGTTTCTTTTGCAACTGTGCAGTGGAATGGATGAGAATGCTGTGGGTTCCTGTGCTGAACTCATTTTCGCTCCCATTGATGCTTCTTTTGCTGATGATGCACCTCTTCTACCGTCTGGTTTTCGCATCATTCCTCTTGATTATGGGAAGGAATCTGCCAGTCCAAATCGCACCTTGGACCTTGCTTCTGCTCTTGAAATTGGGCCAACTGGAAATAAAGGATCTGGTGAATATTCTGCAAATGCGGGTTGTGTAAGATCTGTGATGACTATAGCATTTGAATTTGCTTGTGAGAGCCACATGCAAGAGCATGTAGCATCCATGGCCCGGCAATATGTTCGCAGCATTATATCGTCAGTTCAGAGGGTGGCATTAGCTCTCTCTCCTTCACATTTGAGTTCACAGGCTGGTCTTCGGTCACCACTTGGTACTCCTGAAGCGCAAACACTTGCTCGTTGGATCTGTAACAGTTACAGGTGCTATTTGGGTGTGGAGCTGCTCAAATCTGGCAATGAAAGAAGTGAATCCATCCTCAAATCCTTGTGGCATCACTCGGATGCAATTATGTGCTGCTCTCTGAAGGCATTGCCAGTTTTCACCTTTGCAAACCAGGCAGGGCTCGACATGCTGGAGACCACCTTGGTTGCGCTCCAAGACATAACTTTGGAAAAGATATTTGATGACCATGGACGAAAGACTCTATGCTCGGAATTCCCCCAAATAATGCAACAGGGTTTCACATGTCTTCCAGGTGGCATCTGTCTTTCGAGCATGGGGCGACCGGTGTCATATGAGAGAGCGGTGGCTTGGAAGGTGTTGAACGAAGAGGAGACGGCTCACTGCATGTGTTTCTTGTTTGTAAACTGGTCTTTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox MEKHLA START

Protein Analysis

839

Amino Acids

92.12

Weight (kDa)

6.14

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 17 - 75 3.5e-15 Homeodomain
START PF01852 161 - 369 2.1e-50 START domain
MEKHLA PF08670 695 - 837 2e-48 MEKHLA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52150 AT1G52150 AT1G52150
fragaria_vesca FvH4_6g32240
malus_domestica MD09G1205400.v1.1 MD17G1185400.v1.1
prunus_persica Prupe.3G060700_v2.0.a1
pyrus_communis pycom09g12200 pycom17g19500
rosa_chinensis RchiOBHm_Chr2g0140131
rosa_laevigata RLG00000019854
rosa_roxburghii Rroxscaffold_2G00105020
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2BG422400 Rh2CG398100
rosa_wichuraiana Rw2G033760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 2 cut(s) 64, 307
AccB1I GGYRCC 1 cut(s) 793
AccBSI CCGCTC 1 cut(s) 2438
AccII CGCG 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 6 cut(s) 446, 630, 662, 1085, 1883, 2438
AclWI GGATC 3 cut(s) 661, 1867, 2105
AcoI YGGCCR 2 cut(s) 418, 1603
AcsI RAATTY 2 cut(s) 1919, 2348
AcuI CTGAAG 3 cut(s) 1047, 2094, 2237
AcvI CACGTG 1 cut(s) 623
AcyI GRCGYC 2 cut(s) 794, 1153
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 3 cut(s) 62, 1392, 2068
AfiI CCNNNNNNNGG 5 cut(s) 90, 655, 965, 966, 1965
AflIII ACRYGT 1 cut(s) 2378
AgeI ACCGGT 1 cut(s) 2419
AgsI TTSAA 6 cut(s) 80, 513, 978, 1835, 1919, 2458
AjnI CCWGG 8 cut(s) 363, 550, 562, 633, 653, 1545, 2247, 2386
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AleI CACNNNNGTG 1 cut(s) 611
Alw21I GWGCWC 1 cut(s) 1428
Alw26I GTCTC 5 cut(s) 327, 1293, 1512, 2264, 2462
AlwI GGATC 3 cut(s) 661, 1867, 2105
Ama87I CYCGRG 1 cut(s) 1509
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 7 cut(s) 418, 631, 1487, 1548, 1603, 1841, 1962
ApoI RAATTY 2 cut(s) 1919, 2348
AsiGI ACCGGT 1 cut(s) 2419
Asp700I GAANNNNTTC 1 cut(s) 1641
AspLEI GCGC 8 cut(s) 243, 781, 796, 822, 1038, 1114, 2080, 2287
AspS9I GGNCC 8 cut(s) 541, 566, 890, 1487, 1549, 1816, 1841, 1963
AsuC2I CCSGG 1 cut(s) 1966
AsuHPI GGTGA 4 cut(s) 421, 1877, 2049, 2227
AvaI CYCGRG 1 cut(s) 1509
AvaII GGWCC 4 cut(s) 541, 566, 890, 1816
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 2 cut(s) 420, 1605
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 2259
BbrPI CACGTG 1 cut(s) 623
BbsI GAAGAC 3 cut(s) 1156, 2042, 2375
Bbv12I GWGCWC 1 cut(s) 1428
BbvCI CCTCAGC 2 cut(s) 438, 1100
BccI CCATC 5 cut(s) 14, 836, 1237, 1247, 2174
BceAI ACGGC 2 cut(s) 687, 2487
BcgI CGANNNNNNTGC 2 cut(s) 1958, 1992
BciT130I CCWGG 8 cut(s) 365, 552, 564, 635, 655, 1547, 2249, 2388
BciVI GTATCC 1 cut(s) 938
BcnI CCSGG 1 cut(s) 1966
BcoDI GTCTC 5 cut(s) 327, 1293, 1512, 2264, 2462
BfaI CTAG 2 cut(s) 644, 939
BfmI CTRYAG 6 cut(s) 465, 708, 732, 1158, 1470, 1908
BfoI RGCGCY 1 cut(s) 797
BfuAI ACCTGC 2 cut(s) 64, 307
BfuI GTATCC 1 cut(s) 938
BglII AGATCT 3 cut(s) 676, 866, 1895
BlpI GCTNAGC 2 cut(s) 1187, 1498
Bme1390I CCNGG 9 cut(s) 365, 552, 564, 635, 655, 1547, 1966, 2249, 2388
Bme18I GGWCC 4 cut(s) 541, 566, 890, 1816
BmeT110I CYCGRG 1 cut(s) 1509
BmgT120I GGNCC 8 cut(s) 541, 566, 890, 1487, 1549, 1816, 1841, 1963
BmiI GGNNCC 7 cut(s) 197, 542, 748, 795, 1011, 1415, 1687
BmrFI CCNGG 9 cut(s) 365, 552, 564, 635, 655, 1547, 1966, 2249, 2388
BmrI ACTGGG 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 111
BoxI GACNNNNGTC 2 cut(s) 475, 2422
BpiI GAAGAC 3 cut(s) 1156, 2042, 2375
BpmI CTGGAG 3 cut(s) 630, 888, 2288
Bpu10I CCTNAGC 3 cut(s) 69, 438, 1100
Bpu1102I GCTNAGC 2 cut(s) 1187, 1498
BpuEI CTTGAG 2 cut(s) 107, 1580
BpuMI CCSGG 1 cut(s) 1966
BsaAI YACGTR 2 cut(s) 623, 695
BsaHI GRCGYC 2 cut(s) 794, 1153
BsaI GGTCTC 2 cut(s) 1512, 2264
BsaJI CCNNGG 9 cut(s) 363, 364, 449, 654, 1545, 1812, 1959, 2277, 2323
BsaWI WCCGGW 2 cut(s) 568, 2419
BsaXI ACNNNNNCTCC 4 cut(s) 886, 916, 1518, 1548
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 655, 965, 966, 1965
Bse118I RCCGGY 1 cut(s) 2419
Bse1I ACTGG 8 cut(s) 117, 526, 613, 905, 1797, 1852, 2228, 2507
Bse3DI GCAATG 4 cut(s) 480, 1629, 2155, 2222
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 8 cut(s) 365, 552, 564, 635, 655, 1547, 2249, 2388
BseDI CCNNGG 9 cut(s) 363, 364, 449, 654, 1545, 1812, 1959, 2277, 2323
BseGI GGATG 9 cut(s) 25, 442, 460, 847, 1267, 1675, 1955, 2166, 2200
BseLI CCNNNNNNNGG 5 cut(s) 90, 655, 965, 966, 1965
BseMI GCAATG 4 cut(s) 480, 1629, 2155, 2222
BseMII CTCAG 5 cut(s) 60, 452, 896, 1091, 1479
BseNI ACTGG 8 cut(s) 117, 526, 613, 905, 1797, 1852, 2228, 2507
BseRI GAGGAG 1 cut(s) 2480
BseSI GKGCMC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 1502
BsgI GTGCAG 2 cut(s) 929, 1678
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 2420
BshFI GGCC 7 cut(s) 420, 633, 1489, 1550, 1605, 1843, 1964
BshNI GGYRCC 1 cut(s) 793
BshTI ACCGGT 1 cut(s) 2419
BsiEI CGRYCG 1 cut(s) 2420
BsiHKAI GWGCWC 1 cut(s) 1428
BsiHKCI CYCGRG 1 cut(s) 1509
BsiSI CCGG 3 cut(s) 569, 1966, 2420
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 5 cut(s) 90, 655, 965, 966, 1965
BsmAI GTCTC 5 cut(s) 327, 1293, 1512, 2264, 2462
BsmBI CGTCTC 2 cut(s) 1293, 2462
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 1681
BsnI GGCC 7 cut(s) 420, 633, 1489, 1550, 1605, 1843, 1964
Bso31I GGTCTC 2 cut(s) 1512, 2264
BsoBI CYCGRG 1 cut(s) 1509
Bsp1286I GDGCHC 3 cut(s) 155, 1428, 2259
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
Bsp1720I GCTNAGC 2 cut(s) 1187, 1498
Bsp19I CCATGG 2 cut(s) 1959, 2323
BspACI CCGC 6 cut(s) 446, 630, 662, 1085, 1883, 2438
BspANI GGCC 7 cut(s) 420, 633, 1489, 1550, 1605, 1843, 1964
BspCNI CTCAG 5 cut(s) 61, 451, 895, 1092, 1478
BspEI TCCGGA 1 cut(s) 568
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 7 cut(s) 197, 542, 748, 795, 1011, 1415, 1687
BspMAI CTGCAG 3 cut(s) 469, 1162, 1474
BspMI ACCTGC 2 cut(s) 64, 307
BspPI GGATC 3 cut(s) 661, 1867, 2105
BspT107I GGYRCC 1 cut(s) 793
BspTNI GGTCTC 2 cut(s) 1512, 2264
BsrBI CCGCTC 1 cut(s) 2438
BsrDI GCAATG 4 cut(s) 480, 1629, 2155, 2222
BsrFI RCCGGY 1 cut(s) 2419
BsrI ACTGG 8 cut(s) 117, 526, 613, 905, 1797, 1852, 2228, 2507
BssAI RCCGGY 1 cut(s) 2419
BssECI CCNNGG 9 cut(s) 363, 364, 449, 654, 1545, 1812, 1959, 2277, 2323
BssMI GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
BssNI GRCGYC 2 cut(s) 794, 1153
BssT1I CCWWGG 5 cut(s) 449, 1812, 1959, 2277, 2323
Bst2UI CCWGG 8 cut(s) 365, 552, 564, 635, 655, 1547, 2249, 2388
Bst4CI ACNGT 4 cut(s) 743, 1656, 1752, 2108
Bst6I CTCTTC 3 cut(s) 1563, 1749, 2457
BstACI GRCGYC 2 cut(s) 794, 1153
BstAPI GCANNNNNTGC 2 cut(s) 464, 623
BstBAI YACGTR 2 cut(s) 623, 695
BstC8I GCNNGC 4 cut(s) 378, 628, 798, 1022
BstDEI CTNAG 7 cut(s) 69, 438, 882, 1100, 1187, 1465, 1498
BstDSI CCRYGG 2 cut(s) 1959, 2323
BstEII GGTNACC 1 cut(s) 2055
BstF5I GGATG 9 cut(s) 25, 442, 460, 847, 1267, 1675, 1955, 2166, 2200
BstFNI CGCG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 8 cut(s) 243, 781, 796, 822, 1038, 1114, 2080, 2287
BstKTI GATC 7 cut(s) 669, 679, 869, 1433, 1862, 1898, 2100
BstMAI GTCTC 5 cut(s) 327, 1293, 1512, 2264, 2462
BstMBI GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
BstMCI CGRYCG 1 cut(s) 2420
BstNI CCWGG 8 cut(s) 365, 552, 564, 635, 655, 1547, 2249, 2388
BstNSI RCATGY 7 cut(s) 35, 769, 1942, 1952, 2266, 2382, 2485
BstPAI GACNNNNGTC 2 cut(s) 475, 2422
BstPI GGTNACC 1 cut(s) 2055
BstSCI CCNGG 9 cut(s) 363, 550, 562, 633, 653, 1545, 1964, 2247, 2386
BstSFI CTRYAG 6 cut(s) 465, 708, 732, 1158, 1470, 1908
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 1 cut(s) 241
BstV2I GAAGAC 3 cut(s) 1156, 2042, 2375
BstX2I RGATCY 6 cut(s) 666, 676, 866, 1859, 1895, 2097
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 6 cut(s) 666, 676, 866, 1859, 1895, 2097
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 7 cut(s) 420, 633, 1489, 1550, 1605, 1843, 1964
BtgI CCRYGG 2 cut(s) 1959, 2323
BtsCI GGATG 9 cut(s) 25, 442, 460, 847, 1267, 1675, 1955, 2166, 2200
BtsI GCAGTG 3 cut(s) 267, 1666, 2476
BtsIMutI CAGTG 5 cut(s) 267, 606, 912, 1666, 2476
BveI ACCTGC 2 cut(s) 64, 307
Cac8I GCNNGC 4 cut(s) 378, 628, 798, 1022
CciI TCATGA 1 cut(s) 100
CfoI GCGC 8 cut(s) 243, 781, 796, 822, 1038, 1114, 2080, 2287
Cfr10I RCCGGY 1 cut(s) 2419
Cfr13I GGNCC 8 cut(s) 541, 566, 890, 1487, 1549, 1816, 1841, 1963
CseI GACGC 1 cut(s) 1161
Csp6I GTAC 3 cut(s) 61, 1391, 2067
CspAI ACCGGT 1 cut(s) 2419
CspCI CAANNNNNGTGG 2 cut(s) 2263, 2298
CviQI GTAC 3 cut(s) 61, 1391, 2067
DdeI CTNAG 7 cut(s) 69, 438, 882, 1100, 1187, 1465, 1498
DinI GGCGCC 1 cut(s) 795
DpnI GATC 7 cut(s) 668, 678, 868, 1432, 1861, 1897, 2099
DpnII GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
DraI TTTAAA 1 cut(s) 720
DraIII CACNNNGTG 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 418, 1603
Eam1104I CTCTTC 3 cut(s) 1563, 1749, 2457
EarI CTCTTC 3 cut(s) 1563, 1749, 2457
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 5 cut(s) 449, 1812, 1959, 2277, 2323
Eco24I GRGCYC 1 cut(s) 2259
Eco31I GGTCTC 2 cut(s) 1512, 2264
Eco47I GGWCC 4 cut(s) 541, 566, 890, 1816
Eco57I CTGAAG 3 cut(s) 1047, 2094, 2237
Eco72I CACGTG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 1509
Eco91I GGTNACC 1 cut(s) 2055
EcoO65I GGTNACC 1 cut(s) 2055
EcoRI GAATTC 1 cut(s) 2348
EcoRII CCWGG 8 cut(s) 363, 550, 562, 633, 653, 1545, 2247, 2386
EcoT14I CCWWGG 5 cut(s) 449, 1812, 1959, 2277, 2323
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 2259
EgeI GGCGCC 1 cut(s) 795
EheI GGCGCC 1 cut(s) 795
ErhI CCWWGG 5 cut(s) 449, 1812, 1959, 2277, 2323
Esp3I CGTCTC 2 cut(s) 1293, 2462
FalI AAGNNNNNCTT 2 cut(s) 1524, 1556
FaqI GGGAC 1 cut(s) 382
FauI CCCGC 1 cut(s) 1876
FauNDI CATATG 2 cut(s) 999, 2428
FokI GGATG 9 cut(s) 32, 429, 467, 854, 1274, 1682, 1942, 2153, 2207
FriOI GRGCYC 1 cut(s) 2259
FspBI CTAG 2 cut(s) 644, 939
GlaI GCGC 8 cut(s) 242, 780, 795, 821, 1037, 1113, 2079, 2286
GsaI CCCAGC 1 cut(s) 1506
GsuI CTGGAG 3 cut(s) 630, 888, 2288
HaeII RGCGCY 1 cut(s) 797
HaeIII GGCC 7 cut(s) 420, 633, 1489, 1550, 1605, 1843, 1964
HapII CCGG 3 cut(s) 569, 1966, 2420
HgaI GACGC 1 cut(s) 1161
HhaI GCGC 8 cut(s) 243, 781, 796, 822, 1038, 1114, 2080, 2287
Hin1I GRCGYC 2 cut(s) 794, 1153
Hin6I GCGC 8 cut(s) 241, 779, 794, 820, 1036, 1112, 2078, 2285
HinP1I GCGC 8 cut(s) 241, 779, 794, 820, 1036, 1112, 2078, 2285
HincII GTYRAC 2 cut(s) 256, 994
HindII GTYRAC 2 cut(s) 256, 994
HinfI GANTC 9 cut(s) 124, 157, 401, 572, 582, 1049, 1790, 2162, 2335
HpaII CCGG 3 cut(s) 569, 1966, 2420
HphI GGTGA 4 cut(s) 421, 1877, 2049, 2227
Hpy166II GTNNAC 5 cut(s) 63, 256, 994, 2039, 2500
Hpy188I TCNGA 9 cut(s) 873, 885, 1435, 1526, 2001, 2194, 2217, 2347, 2516
Hpy8I GTNNAC 5 cut(s) 63, 256, 994, 2039, 2500
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 6 cut(s) 959, 1589, 1780, 2034, 2212, 2443
HpyCH4III ACNGT 4 cut(s) 743, 1656, 1752, 2108
HpyCH4IV ACGT 3 cut(s) 622, 694, 1093
HpyF3I CTNAG 7 cut(s) 69, 438, 882, 1100, 1187, 1465, 1498
HpySE526I ACGT 3 cut(s) 622, 694, 1093
Hsp92I GRCGYC 2 cut(s) 794, 1153
HspAI GCGC 8 cut(s) 241, 779, 794, 820, 1036, 1112, 2078, 2285
KasI GGCGCC 1 cut(s) 793
Kpn2I TCCGGA 1 cut(s) 568
Kzo9I GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
LmnI GCTCC 4 cut(s) 1009, 1714, 2131, 2292
MaeI CTAG 2 cut(s) 644, 939
MaeII ACGT 3 cut(s) 622, 694, 1093
MaeIII GTNAC 8 cut(s) 409, 690, 1135, 1267, 1380, 2055, 2102, 2108
MalI GATC 7 cut(s) 668, 678, 868, 1432, 1861, 1897, 2099
MbiI CCGCTC 1 cut(s) 2438
MboI GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
MflI RGATCY 6 cut(s) 666, 676, 866, 1859, 1895, 2097
MhlI GDGCHC 3 cut(s) 155, 1428, 2259
MlsI TGGCCA 2 cut(s) 420, 1605
MluCI AATT 6 cut(s) 1348, 1589, 1836, 1919, 2199, 2348
MluNI TGGCCA 2 cut(s) 420, 1605
Mly113I GGCGCC 1 cut(s) 794
MlyI GAGTC 1 cut(s) 2329
MmeI TCCRAC 3 cut(s) 917, 1495, 2075
Mox20I TGGCCA 2 cut(s) 420, 1605
Mph1103I ATGCAT 1 cut(s) 37
MroI TCCGGA 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 1641
MscI TGGCCA 2 cut(s) 420, 1605
MseI TTAA 9 cut(s) 186, 719, 1175, 1200, 1212, 1301, 1310, 1479, 1587
MslI CAYNNNNRTG 3 cut(s) 272, 611, 2193
Msp20I TGGCCA 2 cut(s) 420, 1605
MspA1I CMGCKG 5 cut(s) 1058, 1099, 1340, 1469, 1475
MspI CCGG 3 cut(s) 569, 1966, 2420
MspR9I CCNGG 9 cut(s) 365, 552, 564, 635, 655, 1547, 1966, 2249, 2388
Mva1269I GAATGC 1 cut(s) 1681
MvaI CCWGG 8 cut(s) 365, 552, 564, 635, 655, 1547, 2249, 2388
MvnI CGCG 1 cut(s) 241
NarI GGCGCC 1 cut(s) 794
NciI CCSGG 1 cut(s) 1966
NcoI CCATGG 2 cut(s) 1959, 2323
NdeI CATATG 2 cut(s) 999, 2428
NdeII GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
NlaIV GGNNCC 7 cut(s) 197, 542, 748, 795, 1011, 1415, 1687
NmeAIII GCCGAG 1 cut(s) 1656
NmuCI GTSAC 3 cut(s) 409, 1135, 2055
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 7 cut(s) 35, 769, 1942, 1952, 2266, 2382, 2485
OliI CACNNNNGTG 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 1509
PagI TCATGA 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 364
PciI ACATGT 1 cut(s) 2378
PcsI WCGNNNNNNNCGW 3 cut(s) 410, 700, 1417
PctI GAATGC 1 cut(s) 1681
PdmI GAANNNNTTC 1 cut(s) 1641
PfeI GAWTC 8 cut(s) 124, 157, 401, 572, 582, 1049, 1790, 2162
PinAI ACCGGT 1 cut(s) 2419
PleI GAGTC 1 cut(s) 2329
PluTI GGCGCC 1 cut(s) 797
PmaCI CACGTG 1 cut(s) 623
PmlI CACGTG 1 cut(s) 623
PpsI GAGTC 1 cut(s) 2329
Ppu21I YACGTR 2 cut(s) 623, 695
PscI ACATGT 1 cut(s) 2378
PshAI GACNNNNGTC 2 cut(s) 475, 2422
Psp6I CCWGG 8 cut(s) 363, 550, 562, 633, 653, 1545, 2247, 2386
PspCI CACGTG 1 cut(s) 623
PspEI GGTNACC 1 cut(s) 2055
PspFI CCCAGC 1 cut(s) 1502
PspGI CCWGG 8 cut(s) 363, 550, 562, 633, 653, 1545, 2247, 2386
PspN4I GGNNCC 7 cut(s) 197, 542, 748, 795, 1011, 1415, 1687
PspPI GGNCC 8 cut(s) 541, 566, 890, 1487, 1549, 1816, 1841, 1963
PstI CTGCAG 3 cut(s) 469, 1162, 1474
PsuI RGATCY 6 cut(s) 666, 676, 866, 1859, 1895, 2097
PvuII CAGCTG 5 cut(s) 1058, 1099, 1340, 1469, 1475
RsaI GTAC 3 cut(s) 62, 1392, 2068
RsaNI GTAC 3 cut(s) 61, 1391, 2067
RseI CAYNNNNRTG 3 cut(s) 272, 611, 2193
SaqAI TTAA 9 cut(s) 186, 719, 1175, 1200, 1212, 1301, 1310, 1479, 1587
Sau3AI GATC 7 cut(s) 666, 676, 866, 1430, 1859, 1895, 2097
Sau96I GGNCC 8 cut(s) 541, 566, 890, 1487, 1549, 1816, 1841, 1963
SbfI CCTGCAGG 1 cut(s) 469
SchI GAGTC 1 cut(s) 2329
ScrFI CCNGG 9 cut(s) 365, 552, 564, 635, 655, 1547, 1966, 2249, 2388
SdaI CCTGCAGG 1 cut(s) 469
SduI GDGCHC 3 cut(s) 155, 1428, 2259
SfcI CTRYAG 6 cut(s) 465, 708, 732, 1158, 1470, 1908
SfoI GGCGCC 1 cut(s) 795
Sfr274I CTCGAG 1 cut(s) 1509
SinI GGWCC 4 cut(s) 541, 566, 890, 1816
SlaI CTCGAG 1 cut(s) 1509
SmiMI CAYNNNNRTG 3 cut(s) 272, 611, 2193
SmlI CTYRAG 3 cut(s) 86, 1509, 1559
SmoI CTYRAG 3 cut(s) 86, 1509, 1559
Sse8387I CCTGCAGG 1 cut(s) 469
Sse9I AATT 6 cut(s) 1348, 1589, 1836, 1919, 2199, 2348
SsiI CCGC 6 cut(s) 446, 630, 662, 1085, 1883, 2438
SspDI GGCGCC 1 cut(s) 793
SspI AATATT 2 cut(s) 1453, 1871
SspMI CTAG 2 cut(s) 644, 939
StyD4I CCNGG 9 cut(s) 363, 550, 562, 633, 653, 1545, 1964, 2247, 2386
StyI CCWWGG 5 cut(s) 449, 1812, 1959, 2277, 2323
TaaI ACNGT 4 cut(s) 743, 1656, 1752, 2108
TaiI ACGT 3 cut(s) 625, 697, 1096
TaqI TCGA 6 cut(s) 122, 171, 1510, 1614, 2259, 2405
TaqII GACCGA 1 cut(s) 2043
TasI AATT 6 cut(s) 1348, 1589, 1836, 1919, 2199, 2348
TauI GCSGC 2 cut(s) 633, 1088
TfiI GAWTC 8 cut(s) 124, 157, 401, 572, 582, 1049, 1790, 2162
Tru1I TTAA 9 cut(s) 186, 719, 1175, 1200, 1212, 1301, 1310, 1479, 1587
Tru9I TTAA 9 cut(s) 186, 719, 1175, 1200, 1212, 1301, 1310, 1479, 1587
TscAI CASTG 5 cut(s) 274, 613, 912, 1666, 2483
TseFI GTSAC 3 cut(s) 409, 1135, 2055
Tsp45I GTSAC 3 cut(s) 409, 1135, 2055
TspDTI ATGAA 6 cut(s) 290, 351, 572, 1062, 1581, 2166
TspGWI ACGGA 2 cut(s) 341, 1342
TspRI CASTG 5 cut(s) 274, 613, 912, 1666, 2483
VpaK11BI GGWCC 4 cut(s) 541, 566, 890, 1816
XapI RAATTY 2 cut(s) 1919, 2348
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 7 cut(s) 35, 769, 1942, 1952, 2266, 2382, 2485
XhoI CTCGAG 1 cut(s) 1509
XmnI GAANNNNTTC 1 cut(s) 1641
XspI CTAG 2 cut(s) 644, 939
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.