MD17G1272500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014083
Physical Location & Seq
Forward (+)
33437750 .. 33440877
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1272500.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGCGAAGCGAGTCGGCAGCCGGAACTCGAACGAGTCCGCATTGACTCGGGGCGTCAAGTCGGTCTTTCGCTTTGTTCGATTCGCCGAGTTCGAAATCCTGTTTGTTCTTTTCTTCGTAATCGCTTTCATCATTTTCAAAGATCTCACATCAAAGCCGGAATACAGTCAGATTCTCGTAAAAAAGCCCGGTGGCGTTAGTATTTGGCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.18

Weight (kDa)

10.2

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14430
fragaria_vesca FvH4_1g27230 FvH4_1g27230 FvH4_1g27230 FvH4_1g27230
malus_domestica MD09G1282700.v1.1 MD17G1272500.v1.1
prunus_persica Prupe.3G011500_v2.0.a1
pyrus_communis pycom09g19070
rosa_chinensis RchiOBHm_Chr3g0487701
rosa_roxburghii Rroxscaffold_6G00394600
rosa_rugosa Rorug03G0235700
rosa_samantha Rh3AG283900 Rh3BG320200 Rh3CG318600 Rh3DG317500
rosa_wichuraiana Rw3G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 48
BbvI GCAGC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 214
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 3 cut(s) 22, 158, 189
BsnI GGCC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 93
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 93
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 208
CseI GACGC 1 cut(s) 43
CviJI RGCY 4 cut(s) 21, 157, 187, 208
CviKI_1 RGCY 4 cut(s) 21, 157, 187, 208
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 50, 82
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 214
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 208
HapII CCGG 3 cut(s) 22, 158, 189
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 54
HinfI GANTC 5 cut(s) 12, 35, 46, 81, 172
HpaII CCGG 3 cut(s) 22, 158, 189
Hpy188I TCNGA 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 35, 113, 171, 202
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 1 cut(s) 214
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 142
MlyI GAGTC 3 cut(s) 21, 40, 44
MspI CCGG 3 cut(s) 22, 158, 189
MspR9I CCNGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 112
NspV TTCGAA 1 cut(s) 93
PcsI WCGNNNNNNNCGW 2 cut(s) 76, 90
PfeI GAWTC 2 cut(s) 81, 172
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 3 cut(s) 20, 40, 43
PpsI GAGTC 3 cut(s) 20, 40, 43
PsuI RGATCY 1 cut(s) 142
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 3 cut(s) 21, 40, 44
ScrFI CCNGG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 93
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 29, 79, 93
TaqII GACCGA 1 cut(s) 52
TfiI GAWTC 2 cut(s) 81, 172
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 118
XspI CTAG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.