Rh3DG317500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
34245702 .. 34249441
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG317500.1

Sequence Viewer

Length: 219 bp
ATGGCGAAGCGAGTCGGAAGCAGGAAAAAGGACGACGAGTCTGCATTGACTCGGACTGTCAACTCGGTCTTTAGCTTCTTCAGATTCGCCGAGTTTGAAATTCTGTTCGTGCTCTTCTTCGTTATCGCCTTCATCATTTTCAAAGATCTCACGTCGCGGCCAGAATATAGTCAGATTCTCGTAAAGAAGCCTGACGGAGGTGGTTTTTGGCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.41

Weight (kDa)

9.52

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014083)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 98, 142
AhdI GACNNNNNGTC 1 cut(s) 37
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 1 cut(s) 114
AoxI GGCC 2 cut(s) 158, 209
ApoI RAATTY 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BfaI CTAG 1 cut(s) 217
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 160, 211
BsiHKAI GWGCWC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 2 cut(s) 160, 211
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 160, 211
BspFNI CGCG 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 119
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstUI CGCG 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 160, 211
BtrI CACGTC 1 cut(s) 153
CviJI RGCY 4 cut(s) 75, 160, 190, 211
CviKI_1 RGCY 4 cut(s) 75, 160, 190, 211
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 195
FaiI YATR 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 217
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 2 cut(s) 160, 211
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 5 cut(s) 12, 38, 49, 84, 175
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 17, 54, 83, 174
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 2 cut(s) 38, 157
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 152
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 7, 174, 204
MaeI CTAG 1 cut(s) 217
MaeII ACGT 1 cut(s) 152
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 70, 106, 109
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 99
MlyI GAGTC 3 cut(s) 21, 43, 47
MnlI CCTC 1 cut(s) 191
MvnI CGCG 1 cut(s) 157
NdeII GATC 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 84, 175
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 3 cut(s) 20, 43, 46
PpsI GAGTC 3 cut(s) 20, 43, 46
PsuI RGATCY 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 3 cut(s) 21, 43, 47
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 77, 155, 202
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 155
TaqII GACCGA 1 cut(s) 55
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 84, 175
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 1 cut(s) 99
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.