pycom09g19070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014083
Physical Location & Seq
Forward (+)
19845444 .. 19847540
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19070.2

Sequence Viewer

Length: 294 bp
ATGCCATCCTCGCGAACCCCTTTACTACCAACTACCAAGGTAAACGAAGGCACACGATACAGAGCCACCACTGCAACGATGGCGAAACGAGTCAGCAGCCGGAATTCGAACGAGGCCGCATTGACTGGGGGCGTCAAGTCGGTCTTTCGGTTCTTTCGATTCGCCGAGTTCGAAATCCTCTTTGTTCTTTTCTTCGTAATCGCTTTCATCATTTTCAAAGATCTCACATCGAGGCCGGAATACAGTCAGATTCTCGTAAAAAAGCCAGGCGGCGGTAGTATTTGGCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

10.48

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14430
fragaria_vesca FvH4_1g27230 FvH4_1g27230 FvH4_1g27230 FvH4_1g27230
malus_domestica MD09G1282700.v1.1 MD17G1272500.v1.1
prunus_persica Prupe.3G011500_v2.0.a1
pyrus_communis pycom09g19070
rosa_chinensis RchiOBHm_Chr3g0487701
rosa_roxburghii Rroxscaffold_6G00394600
rosa_rugosa Rorug03G0235700
rosa_samantha Rh3AG283900 Rh3BG320200 Rh3CG318600 Rh3DG317500
rosa_wichuraiana Rw3G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 117, 270, 273
AcsI RAATTY 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 265
AoxI GGCC 3 cut(s) 114, 233, 284
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 103
AsuII TTCGAA 2 cut(s) 107, 171
BbvI GCAGC 1 cut(s) 108
BccI CCATC 2 cut(s) 13, 73
BciT130I CCWGG 1 cut(s) 267
BfaI CTAG 1 cut(s) 292
BglII AGATCT 1 cut(s) 220
BisI GCNGC 3 cut(s) 97, 117, 271
BlsI GCNGC 3 cut(s) 98, 118, 272
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 2 cut(s) 107, 171
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 3 cut(s) 116, 235, 286
BsiSI CCGG 2 cut(s) 100, 236
BslI CCNNNNNNNGG 1 cut(s) 272
BsnI GGCC 3 cut(s) 116, 235, 286
Bsp119I TTCGAA 2 cut(s) 107, 171
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 3 cut(s) 117, 270, 273
BspANI GGCC 3 cut(s) 116, 235, 286
BspFNI CGCG 1 cut(s) 13
BspT104I TTCGAA 2 cut(s) 107, 171
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 2 cut(s) 107, 171
BstF5I GGATG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 10, 71, 80
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 116, 235, 286
BtsCI GGATG 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
BtuMI TCGCGA 1 cut(s) 13
CseI GACGC 1 cut(s) 121
CviJI RGCY 6 cut(s) 65, 99, 116, 235, 265, 286
CviKI_1 RGCY 6 cut(s) 65, 99, 116, 235, 265, 286
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 128, 160
Fnu4HI GCNGC 3 cut(s) 97, 117, 271
Fsp4HI GCNGC 3 cut(s) 97, 117, 271
FspBI CTAG 1 cut(s) 292
GluI GCNGC 3 cut(s) 97, 117, 271
HaeIII GGCC 3 cut(s) 116, 235, 286
HapII CCGG 2 cut(s) 100, 236
HgaI GACGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 132
HinfI GANTC 3 cut(s) 90, 159, 250
HpaII CCGG 2 cut(s) 100, 236
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 71, 80
Hsp92I GRCGYC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 111, 113, 249, 252, 279
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 1 cut(s) 292
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 220
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 4 cut(s) 19, 106, 188, 225
MspI CCGG 2 cut(s) 100, 236
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 71, 80
NdeII GATC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 190
NruI TCGCGA 1 cut(s) 13
NspV TTCGAA 2 cut(s) 107, 171
PcsI WCGNNNNNNNCGW 2 cut(s) 154, 168
PfeI GAWTC 2 cut(s) 159, 250
PkrI GCNGC 3 cut(s) 98, 118, 272
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 220
RruI TCGCGA 1 cut(s) 13
SatI GCNGC 3 cut(s) 97, 117, 271
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 267
SetI ASST 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 107, 171
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 117, 270, 273
SspMI CTAG 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 4 cut(s) 107, 157, 171, 230
TaqII GACCGA 1 cut(s) 130
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 119, 273
TfiI GAWTC 2 cut(s) 159, 250
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.