Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0024507

Physical Location & Seq

Genomic Coordinates Forward (+)

960359 .. 961111

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCACAGAAGAAAAAAAGACAAAATTTGCTGACTTGGTGTCTGTCTTCAGTGGAAGGAAATGATGAAGTTGTCCTATCATGGAGTTTCTGTGGTCTTGCCAATAACAAGGTTTGGTTTTTAAGCACTTGTAGGATGAAAGTGAAATTTTCTTCAGGATCAAAAGAAGTACAAAGCTACAGAAACTGGTTGATGCTTTGTAACGACCACATTCACAAGTACAAGACTGCTGAGGAGGTGGTGTCATTGGGTTCAAGCTTAAATTTGGTGATAATACTTGCCCTTATAAAAACACACTGCAAGAATTTTTACGGTTTAGATTTGTCCATGACCTTACTTCGTGAACGTGAGGCATTGGCAATTGTCAAGTTGGTGCCTAATATCAAGTGCTTAAACTTGAAAGGTGCAAACGTTAGTCGGGATAGCCTTGTCACATTGCTGCGCGGCTGCAAAGATCTTGTGGTGTTGGACAGCAGGGATTGTATTGGTTTTGATGAGAACGATGATGAAATATTAAAGTTTGCGTCTCATATTAATAAATTTATGTGTAGGGGTTCTATTTTCCGGAATTTCTTCGTAGGTGGTTTTCTACGGATGATTTGGTTTGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

9.26

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024507)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G012600_v2.0.a1 Prupe.2G138800_v2.0.a1 Prupe.3G142500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	373
AccII	CGCG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	564
AciI	CCGC	1 cut(s)	444
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	6 cut(s)	25, 146, 262, 304, 539, 568
AcuI	CTGAAG	2 cut(s)	33, 138
AfaI	GTAC	2 cut(s)	171, 221
AgsI	TTSAA	2 cut(s)	255, 400
AhdI	GACNNNNNGTC	1 cut(s)	39
AluBI	AGCT	2 cut(s)	177, 258
AluI	AGCT	2 cut(s)	177, 258
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	186
Aor13HI	TCCGGA	1 cut(s)	564
ApeKI	GCWGC	2 cut(s)	439, 447
ApoI	RAATTY	6 cut(s)	25, 146, 262, 304, 539, 568
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	426, 434
BcoDI	GTCTC	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	440, 445, 448
BlsI	GCNGC	3 cut(s)	441, 446, 449
BmeRI	GACNNNNNGTC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	564
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 227, 257
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	564
BseGI	GGATG	2 cut(s)	141, 600
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	426, 434
Bsh1236I	CGCG	1 cut(s)	444
BshNI	GGYRCC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	565
BsmAI	GTCTC	1 cut(s)	531
BsmBI	CGTCTC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	158, 454
BspACI	CCGC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	158, 454
Bst4CI	ACNGT	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	141, 600
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	161, 457
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	2 cut(s)	158, 454
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	426, 434
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	141, 600
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	57, 295
CaiI	CAGNNNCTG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	444
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	170, 220
CviAII	CATG	2 cut(s)	81, 328
CviJI	RGCY	4 cut(s)	177, 258, 426, 447
CviKI_1	RGCY	4 cut(s)	177, 258, 426, 447
CviQI	GTAC	2 cut(s)	170, 220
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	160, 456
DpnII	GATC	2 cut(s)	158, 454
DriI	GACNNNNNGTC	1 cut(s)	39
Eam1105I	GACNNNNNGTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	33, 138
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	2 cut(s)	84, 331
FaiI	YATR	5 cut(s)	82, 287, 329, 531, 545
FatI	CATG	2 cut(s)	80, 327
Fnu4HI	GCNGC	3 cut(s)	440, 445, 448
FokI	GGATG	2 cut(s)	148, 607
Fsp4HI	GCNGC	3 cut(s)	440, 445, 448
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	3 cut(s)	440, 445, 448
HapII	CCGG	1 cut(s)	565
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	84, 331
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	256
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188III	TCNNGA	4 cut(s)	156, 341, 419, 565
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	346, 411
HpyCH4V	TGCA	3 cut(s)	300, 407, 450
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	346, 411
Hsp92II	CATG	2 cut(s)	84, 331
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	158, 454
LpnPI	CCDG	4 cut(s)	141, 172, 460, 578
Lsp1109I	GCAGC	2 cut(s)	426, 434
LweI	GCATC	1 cut(s)	183
MaeII	ACGT	2 cut(s)	346, 411
MaeIII	GTNAC	2 cut(s)	200, 430
MalI	GATC	2 cut(s)	160, 456
MboI	GATC	2 cut(s)	158, 454
MboII	GAAGA	4 cut(s)	22, 39, 144, 565
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	7 cut(s)	25, 146, 262, 304, 360, 539, 568
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	3 cut(s)	226, 229, 343
MroI	TCCGGA	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	5 cut(s)	122, 260, 392, 515, 534
MspI	CCGG	1 cut(s)	565
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	444
NdeII	GATC	2 cut(s)	158, 454
NlaIII	CATG	2 cut(s)	84, 331
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	441, 446, 449
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	2 cut(s)	171, 221
RsaNI	GTAC	2 cut(s)	170, 220
SaqAI	TTAA	5 cut(s)	122, 260, 392, 515, 534
SatI	GCNGC	3 cut(s)	440, 445, 448
Sau3AI	GATC	2 cut(s)	158, 454
SetI	ASST	9 cut(s)	114, 179, 240, 260, 335, 349, 406, 414, 583
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	178
Sse9I	AATT	7 cut(s)	25, 146, 262, 304, 360, 539, 568
SsiI	CCGC	1 cut(s)	444
SspI	AATATT	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	2 cut(s)	349, 414
TasI	AATT	7 cut(s)	25, 146, 262, 304, 360, 539, 568
TatI	WGTACW	2 cut(s)	169, 219
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	5 cut(s)	122, 260, 392, 515, 534
Tru9I	TTAA	5 cut(s)	122, 260, 392, 515, 534
TscAI	CASTG	2 cut(s)	57, 302
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	439, 447
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	81, 152, 522
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	2 cut(s)	57, 302
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	6 cut(s)	25, 146, 262, 304, 539, 568
XmnI	GAANNNNTTC	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.