Prupe.3G142500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
15447236 .. 15448174
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G142500.1

Sequence Viewer

Length: 276 bp
ATGGATGTGTCTTGCTGTCATTGGGATGGTTGCGTTGTGGTGTTGTCAACCCAGCTTTTCTCTTTGGTTTTCGTTGTGTTTTTTACGCAAGTATTGCAATCCACCGTAGACGCCATGATTTTGTTGCACCTTTTGGTCCACGCATATGGAATTCGCTCCAATTTAGTGTTTGGAGTTGGAAAAATGATTGTTGCTGGTTTGTGTGGGATCGGGTTTAGCCTGTGCAAAATAAGAGGTTTAGCCATGTTGGTGCTACGAGTCTCTTTGGTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.88

Weight (kDa)

8.3

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 111
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 111
BseGI GGATG 2 cut(s) 10, 31
BseYI CCCAGC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 207
BspPI GGATC 1 cut(s) 215
BssMI GATC 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 10, 31
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 10, 31
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 119
CviAII CATG 2 cut(s) 115, 244
CviJI RGCY 3 cut(s) 55, 219, 242
CviKI_1 RGCY 3 cut(s) 55, 219, 242
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 150
FaeI CATG 2 cut(s) 118, 247
FaiI YATR 4 cut(s) 116, 145, 147, 245
FatI CATG 2 cut(s) 114, 243
FauNDI CATATG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 108
FokI GGATG 2 cut(s) 17, 38
FspBI CTAG 1 cut(s) 274
GsaI CCCAGC 1 cut(s) 55
HgaI GACGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 118, 247
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 258
Hpy166II GTNNAC 3 cut(s) 48, 109, 139
Hpy8I GTNNAC 3 cut(s) 48, 109, 139
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 97, 127, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 118, 247
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 65, 180, 233
MaeI CTAG 1 cut(s) 274
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MluCI AATT 2 cut(s) 150, 160
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 227
MslI CAYNNNNRTG 3 cut(s) 24, 144, 248
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 118, 247
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 136
RseI CAYNNNNRTG 3 cut(s) 24, 144, 248
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 267
SetI ASST 3 cut(s) 57, 132, 238
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 3 cut(s) 24, 144, 248
Sse9I AATT 2 cut(s) 150, 160
SspMI CTAG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 106
TasI AATT 2 cut(s) 150, 160
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.