Prupe.2G138800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
19598655 .. 19605032
6378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G138800.1

Sequence Viewer

Length: 414 bp
ATGATACTCTCAATTCATCTAATTCCATTCCTCTCCCTGTTTCCTGCCTTATTCTCTCTCTCTAGGCTCTCTCCCAAACGACATGTTCACCTCACCACACCAATGACAACTGCGACAATTCCTCCCTCTGCCAACTCCGCCTTATTCTCTTCTCTCTTCGCATTGACGAAAAAAATACAAAATTTGCTGACTTGGTGTCTGTCTTCAGTGGAAGGAAATGATGAAGCTATCCTATCATGGAGTTTCTATGGTCTTGCCAATAACAAGCTTTTGGTCCACGCATATGGAATTCGCTCCAATTTAGTGTTTGGAGTTGGAAAAGTGATTGTTGCTAGTTTGTGTGGGATCGGGTTTAGCCTGTGCAAAATAAGAGGTTTAGCCATGTTGGTGCTACGAGTCTCTTTGGTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.87

Weight (kDa)

9.88

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 181, 288
AcuI CTGAAG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 82
AhdI GACNNNNNGTC 1 cut(s) 195
AluBI AGCT 2 cut(s) 227, 268
AluI AGCT 2 cut(s) 227, 268
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 181, 288
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 80, 85
AvaII GGWCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 3 cut(s) 63, 333, 412
Bme18I GGWCC 1 cut(s) 274
BmeRI GACNNNNNGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
BsmAI GTCTC 1 cut(s) 403
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 353
BssMI GATC 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 154, 161
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 274
CviAII CATG 3 cut(s) 83, 237, 382
CviJI RGCY 5 cut(s) 67, 227, 268, 357, 380
CviKI_1 RGCY 5 cut(s) 67, 227, 268, 357, 380
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 154, 161
Eam1105I GACNNNNNGTC 1 cut(s) 195
EarI CTCTTC 2 cut(s) 154, 161
EciI GGCGGA 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 288
FaeI CATG 3 cut(s) 86, 240, 385
FaiI YATR 6 cut(s) 84, 238, 249, 283, 285, 383
FatI CATG 3 cut(s) 82, 236, 381
FauNDI CATATG 1 cut(s) 283
FspBI CTAG 3 cut(s) 63, 333, 412
Hin1II CATG 3 cut(s) 86, 240, 385
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 396
HphI GGTGA 2 cut(s) 80, 85
Hpy166II GTNNAC 2 cut(s) 88, 277
Hpy8I GTNNAC 2 cut(s) 88, 277
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 86, 240, 385
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 3 cut(s) 50, 57, 371
MaeI CTAG 3 cut(s) 63, 333, 412
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 3 cut(s) 141, 148, 195
MluCI AATT 6 cut(s) 12, 21, 117, 181, 288, 298
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 5 cut(s) 41, 101, 132, 136, 365
MslI CAYNNNNRTG 3 cut(s) 101, 282, 386
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 345
NlaIII CATG 3 cut(s) 86, 240, 385
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PscI ACATGT 1 cut(s) 82
PspPI GGNCC 1 cut(s) 274
RseI CAYNNNNRTG 3 cut(s) 101, 282, 386
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 405
SetI ASST 4 cut(s) 93, 229, 270, 376
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 3 cut(s) 101, 282, 386
Sse9I AATT 6 cut(s) 12, 21, 117, 181, 288, 298
SsiI CCGC 1 cut(s) 138
SspMI CTAG 3 cut(s) 63, 333, 412
TasI AATT 6 cut(s) 12, 21, 117, 181, 288, 298
TscAI CASTG 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 5, 237
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 181, 288
XceI RCATGY 1 cut(s) 86
XspI CTAG 3 cut(s) 63, 333, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.