RING-like zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.1G020100_v2.0.a1 Prupe.1G020100_v2.0.a1 |
| pyrus_communis | pycom13g17220 |
| rosa_roxburghii | Rroxscaffold_5G00334240 |
| rosa_rugosa | Rorug03G0310700 |
| rosa_samantha | Rh4AG016800 Rh4BG011600 Rh4DG012500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 255 |
| AciI | CCGC | 1 cut(s) | 101 |
| AcsI | RAATTY | 1 cut(s) | 247 |
| AfaI | GTAC | 1 cut(s) | 303 |
| AgsI | TTSAA | 2 cut(s) | 246, 252 |
| AjnI | CCWGG | 1 cut(s) | 22 |
| AluBI | AGCT | 1 cut(s) | 173 |
| AluI | AGCT | 1 cut(s) | 173 |
| AoxI | GGCC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 1 cut(s) | 233 |
| ApoI | RAATTY | 1 cut(s) | 247 |
| AspS9I | GGNCC | 2 cut(s) | 367, 447 |
| AvaII | GGWCC | 2 cut(s) | 367, 447 |
| BaeGI | GKGCMC | 1 cut(s) | 382 |
| BbsI | GAAGAC | 1 cut(s) | 395 |
| BbvCI | CCTCAGC | 1 cut(s) | 104 |
| BbvI | GCAGC | 1 cut(s) | 220 |
| BccI | CCATC | 2 cut(s) | 130, 432 |
| BciT130I | CCWGG | 1 cut(s) | 24 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BfaI | CTAG | 1 cut(s) | 185 |
| BfuAI | ACCTGC | 1 cut(s) | 255 |
| BglII | AGATCT | 1 cut(s) | 31 |
| BisI | GCNGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 24 |
| Bme18I | GGWCC | 2 cut(s) | 367, 447 |
| BmgT120I | GGNCC | 2 cut(s) | 367, 447 |
| BmiI | GGNNCC | 2 cut(s) | 120, 449 |
| BmrFI | CCNGG | 1 cut(s) | 24 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BpiI | GAAGAC | 1 cut(s) | 395 |
| BpmI | CTGGAG | 1 cut(s) | 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 4 cut(s) | 23, 144, 363, 410 |
| Bse3DI | GCAATG | 1 cut(s) | 243 |
| BseBI | CCWGG | 1 cut(s) | 24 |
| BseDI | CCNNGG | 4 cut(s) | 23, 144, 363, 410 |
| BseGI | GGATG | 3 cut(s) | 122, 160, 424 |
| BseMI | GCAATG | 1 cut(s) | 243 |
| BseMII | CTCAG | 2 cut(s) | 95, 385 |
| BseRI | GAGGAG | 1 cut(s) | 205 |
| BseSI | GKGCMC | 1 cut(s) | 382 |
| BseXI | GCAGC | 1 cut(s) | 220 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| BshFI | GGCC | 1 cut(s) | 362 |
| BsnI | GGCC | 1 cut(s) | 362 |
| Bsp1286I | GDGCHC | 1 cut(s) | 382 |
| Bsp143I | GATC | 2 cut(s) | 31, 288 |
| Bsp19I | CCATGG | 3 cut(s) | 144, 363, 410 |
| BspACI | CCGC | 1 cut(s) | 101 |
| BspANI | GGCC | 1 cut(s) | 362 |
| BspCNI | CTCAG | 2 cut(s) | 96, 384 |
| BspLI | GGNNCC | 2 cut(s) | 120, 449 |
| BspMI | ACCTGC | 1 cut(s) | 255 |
| BsrDI | GCAATG | 1 cut(s) | 243 |
| BssECI | CCNNGG | 4 cut(s) | 23, 144, 363, 410 |
| BssMI | GATC | 2 cut(s) | 31, 288 |
| BssT1I | CCWWGG | 3 cut(s) | 144, 363, 410 |
| Bst2UI | CCWGG | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 1 cut(s) | 65 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 2 cut(s) | 175, 360 |
| BstDEI | CTNAG | 3 cut(s) | 104, 334, 371 |
| BstDSI | CCRYGG | 3 cut(s) | 144, 363, 410 |
| BstF5I | GGATG | 3 cut(s) | 122, 160, 424 |
| BstKTI | GATC | 2 cut(s) | 34, 291 |
| BstMBI | GATC | 2 cut(s) | 31, 288 |
| BstNI | CCWGG | 1 cut(s) | 24 |
| BstSCI | CCNGG | 1 cut(s) | 22 |
| BstSLI | GKGCMC | 1 cut(s) | 382 |
| BstV1I | GCAGC | 1 cut(s) | 220 |
| BstV2I | GAAGAC | 1 cut(s) | 395 |
| BstX2I | RGATCY | 1 cut(s) | 31 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 31 |
| BsuRI | GGCC | 1 cut(s) | 362 |
| BtgI | CCRYGG | 3 cut(s) | 144, 363, 410 |
| BtsCI | GGATG | 3 cut(s) | 122, 160, 424 |
| BveI | ACCTGC | 1 cut(s) | 255 |
| Cac8I | GCNNGC | 2 cut(s) | 175, 360 |
| Cfr13I | GGNCC | 2 cut(s) | 367, 447 |
| Csp6I | GTAC | 1 cut(s) | 302 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 380, 415 |
| CviAII | CATG | 5 cut(s) | 145, 270, 364, 411, 419 |
| CviQI | GTAC | 1 cut(s) | 302 |
| DdeI | CTNAG | 3 cut(s) | 104, 334, 371 |
| DpnI | GATC | 2 cut(s) | 33, 290 |
| DpnII | GATC | 2 cut(s) | 31, 288 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 3 cut(s) | 144, 363, 410 |
| Eco47I | GGWCC | 2 cut(s) | 367, 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 447 |
| EcoRII | CCWGG | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 3 cut(s) | 144, 363, 410 |
| ErhI | CCWWGG | 3 cut(s) | 144, 363, 410 |
| FaeI | CATG | 5 cut(s) | 148, 273, 367, 414, 422 |
| FaiI | YATR | 8 cut(s) | 78, 87, 146, 271, 365, 384, 412, 420 |
| FatI | CATG | 5 cut(s) | 144, 269, 363, 410, 418 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 1 cut(s) | 234 |
| FokI | GGATG | 3 cut(s) | 109, 167, 411 |
| Fsp4HI | GCNGC | 1 cut(s) | 234 |
| FspBI | CTAG | 1 cut(s) | 185 |
| GluI | GCNGC | 1 cut(s) | 234 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| GsuI | CTGGAG | 1 cut(s) | 137 |
| HaeIII | GGCC | 1 cut(s) | 362 |
| Hin1II | CATG | 5 cut(s) | 148, 273, 367, 414, 422 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| HpyAV | CCTTC | 1 cut(s) | 9 |
| HpyCH4III | ACNGT | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 2 cut(s) | 207, 236 |
| HpyF3I | CTNAG | 3 cut(s) | 104, 334, 371 |
| Hsp92II | CATG | 5 cut(s) | 148, 273, 367, 414, 422 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 2 cut(s) | 31, 288 |
| LmnI | GCTCC | 1 cut(s) | 118 |
| LpnPI | CCDG | 8 cut(s) | 9, 36, 101, 163, 250, 336, 344, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 220 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 1 cut(s) | 185 |
| MaeIII | GTNAC | 1 cut(s) | 136 |
| MalI | GATC | 2 cut(s) | 33, 290 |
| MboI | GATC | 2 cut(s) | 31, 288 |
| MboII | GAAGA | 5 cut(s) | 57, 60, 202, 271, 395 |
| MfeI | CAATTG | 1 cut(s) | 397 |
| MflI | RGATCY | 1 cut(s) | 31 |
| MhlI | GDGCHC | 1 cut(s) | 382 |
| MluCI | AATT | 2 cut(s) | 247, 397 |
| MnlI | CCTC | 9 cut(s) | 48, 99, 151, 174, 186, 223, 226, 340, 380 |
| MseI | TTAA | 1 cut(s) | 460 |
| MspA1I | CMGCKG | 1 cut(s) | 103 |
| MspR9I | CCNGG | 1 cut(s) | 24 |
| MunI | CAATTG | 1 cut(s) | 397 |
| MvaI | CCWGG | 1 cut(s) | 24 |
| NcoI | CCATGG | 3 cut(s) | 144, 363, 410 |
| NdeII | GATC | 2 cut(s) | 31, 288 |
| NlaIII | CATG | 5 cut(s) | 148, 273, 367, 414, 422 |
| NlaIV | GGNNCC | 2 cut(s) | 120, 449 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| PkrI | GCNGC | 1 cut(s) | 235 |
| PpuMI | RGGWCCY | 1 cut(s) | 447 |
| Psp5II | RGGWCCY | 1 cut(s) | 447 |
| Psp6I | CCWGG | 1 cut(s) | 22 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspGI | CCWGG | 1 cut(s) | 22 |
| PspN4I | GGNNCC | 2 cut(s) | 120, 449 |
| PspPI | GGNCC | 2 cut(s) | 367, 447 |
| PspPPI | RGGWCCY | 1 cut(s) | 447 |
| PsuI | RGATCY | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 303 |
| RsaNI | GTAC | 1 cut(s) | 302 |
| SaqAI | TTAA | 1 cut(s) | 460 |
| SatI | GCNGC | 1 cut(s) | 234 |
| Sau3AI | GATC | 2 cut(s) | 31, 288 |
| Sau96I | GGNCC | 2 cut(s) | 367, 447 |
| ScrFI | CCNGG | 1 cut(s) | 24 |
| SduI | GDGCHC | 1 cut(s) | 382 |
| SetI | ASST | 5 cut(s) | 20, 143, 175, 269, 372 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SinI | GGWCC | 2 cut(s) | 367, 447 |
| SmlI | CTYRAG | 1 cut(s) | 217 |
| SmoI | CTYRAG | 1 cut(s) | 217 |
| Sse9I | AATT | 2 cut(s) | 247, 397 |
| SsiI | CCGC | 1 cut(s) | 101 |
| SspMI | CTAG | 1 cut(s) | 185 |
| StyD4I | CCNGG | 1 cut(s) | 22 |
| StyI | CCWWGG | 3 cut(s) | 144, 363, 410 |
| TaaI | ACNGT | 1 cut(s) | 65 |
| TasI | AATT | 2 cut(s) | 247, 397 |
| Tru1I | TTAA | 1 cut(s) | 460 |
| Tru9I | TTAA | 1 cut(s) | 460 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| TseI | GCWGC | 1 cut(s) | 233 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 2 cut(s) | 171, 407 |
| TspGWI | ACGGA | 1 cut(s) | 115 |
| VpaK11BI | GGWCC | 2 cut(s) | 367, 447 |
| XapI | RAATTY | 1 cut(s) | 247 |
| XspI | CTAG | 1 cut(s) | 185 |