Pre-mRNA branch site p14-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12190 |
| fragaria_vesca | FvH4_4g01940 |
| malus_domestica | MD08G1047500.v1.1 |
| prunus_persica | Prupe.1G025000_v2.0.a1 Prupe.1G400800_v2.0.a1 |
| pyrus_communis | pycom08g04000 |
| rosa_chinensis | RchiOBHm_Chr4g0388901 |
| rosa_laevigata | RLG00000010015 |
| rosa_multiflora | Rmu_sc0000697.1_g000003 Rmu_sc0005486.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00335210 |
| rosa_rugosa | Rorug03G0320900 |
| rosa_samantha | Rh4BG018600 Rh4CG028400 Rh4DG019200 |
| rosa_wichuraiana | Rw4G001830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 152 |
| AccB1I | GGYRCC | 3 cut(s) | 128, 152, 173 |
| AciI | CCGC | 5 cut(s) | 6, 70, 177, 218, 253 |
| AclWI | GGATC | 1 cut(s) | 231 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcyI | GRCGYC | 3 cut(s) | 129, 207, 354 |
| AfaI | GTAC | 3 cut(s) | 107, 154, 350 |
| AgsI | TTSAA | 2 cut(s) | 85, 241 |
| AluBI | AGCT | 1 cut(s) | 301 |
| AluI | AGCT | 1 cut(s) | 301 |
| Alw26I | GTCTC | 2 cut(s) | 20, 361 |
| AlwI | GGATC | 1 cut(s) | 231 |
| AoxI | GGCC | 1 cut(s) | 3 |
| Asp718I | GGTACC | 1 cut(s) | 152 |
| AspLEI | GCGC | 1 cut(s) | 131 |
| AsuC2I | CCSGG | 1 cut(s) | 44 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| BanI | GGYRCC | 3 cut(s) | 128, 152, 173 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 98, 130 |
| BccI | CCATC | 1 cut(s) | 283 |
| BceAI | ACGGC | 3 cut(s) | 142, 231, 367 |
| BclI | TGATCA | 1 cut(s) | 304 |
| BcnI | CCSGG | 1 cut(s) | 44 |
| BcoDI | GTCTC | 2 cut(s) | 20, 361 |
| BfoI | RGCGCY | 1 cut(s) | 132 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| BmiI | GGNNCC | 3 cut(s) | 130, 154, 175 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| BmsI | GCATC | 1 cut(s) | 327 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| BpuMI | CCSGG | 1 cut(s) | 44 |
| BsaHI | GRCGYC | 3 cut(s) | 129, 207, 354 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseRI | GAGGAG | 1 cut(s) | 113 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshNI | GGYRCC | 3 cut(s) | 128, 152, 173 |
| BsiSI | CCGG | 2 cut(s) | 44, 234 |
| BsmAI | GTCTC | 2 cut(s) | 20, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 3 cut(s) | 223, 261, 304 |
| BspACI | CCGC | 5 cut(s) | 6, 70, 177, 218, 253 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspLI | GGNNCC | 3 cut(s) | 130, 154, 175 |
| BspPI | GGATC | 1 cut(s) | 231 |
| BspT107I | GGYRCC | 3 cut(s) | 128, 152, 173 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 3 cut(s) | 223, 261, 304 |
| BssNI | GRCGYC | 3 cut(s) | 129, 207, 354 |
| BstACI | GRCGYC | 3 cut(s) | 129, 207, 354 |
| BstC8I | GCNNGC | 1 cut(s) | 282 |
| BstH2I | RGCGCY | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 131 |
| BstKTI | GATC | 3 cut(s) | 226, 264, 307 |
| BstMAI | GTCTC | 2 cut(s) | 20, 361 |
| BstMBI | GATC | 3 cut(s) | 223, 261, 304 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 126, 215 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| Cac8I | GCNNGC | 1 cut(s) | 282 |
| CfoI | GCGC | 1 cut(s) | 131 |
| CseI | GACGC | 2 cut(s) | 215, 343 |
| Csp6I | GTAC | 3 cut(s) | 106, 153, 349 |
| CviJI | RGCY | 3 cut(s) | 5, 237, 301 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 237, 301 |
| CviQI | GTAC | 3 cut(s) | 106, 153, 349 |
| DinI | GGCGCC | 1 cut(s) | 130 |
| DpnI | GATC | 3 cut(s) | 225, 263, 306 |
| DpnII | GATC | 3 cut(s) | 223, 261, 304 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EgeI | GGCGCC | 1 cut(s) | 130 |
| EheI | GGCGCC | 1 cut(s) | 130 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaiI | YATR | 1 cut(s) | 134 |
| FbaI | TGATCA | 1 cut(s) | 304 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| GlaI | GCGC | 1 cut(s) | 130 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeII | RGCGCY | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 2 cut(s) | 44, 234 |
| HgaI | GACGC | 2 cut(s) | 215, 343 |
| HhaI | GCGC | 1 cut(s) | 131 |
| Hin1I | GRCGYC | 3 cut(s) | 129, 207, 354 |
| Hin6I | GCGC | 1 cut(s) | 129 |
| HinP1I | GCGC | 1 cut(s) | 129 |
| HindIII | AAGCTT | 1 cut(s) | 299 |
| HpaII | CCGG | 2 cut(s) | 44, 234 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 190 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 309 |
| Hpy8I | GTNNAC | 1 cut(s) | 190 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 248 |
| HpyAV | CCTTC | 2 cut(s) | 91, 310 |
| HpyCH4IV | ACGT | 2 cut(s) | 66, 243 |
| HpyCH4V | TGCA | 1 cut(s) | 340 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 126, 215 |
| HpySE526I | ACGT | 2 cut(s) | 66, 243 |
| Hsp92I | GRCGYC | 3 cut(s) | 129, 207, 354 |
| HspAI | GCGC | 1 cut(s) | 129 |
| KasI | GGCGCC | 1 cut(s) | 128 |
| KpnI | GGTACC | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 1 cut(s) | 304 |
| Kzo9I | GATC | 3 cut(s) | 223, 261, 304 |
| LpnPI | CCDG | 8 cut(s) | 57, 106, 181, 247, 266, 272, 290, 326 |
| LweI | GCATC | 1 cut(s) | 327 |
| MaeII | ACGT | 2 cut(s) | 66, 243 |
| MalI | GATC | 3 cut(s) | 225, 263, 306 |
| MboI | GATC | 3 cut(s) | 223, 261, 304 |
| MboII | GAAGA | 4 cut(s) | 106, 298, 325, 335 |
| MluCI | AATT | 1 cut(s) | 327 |
| Mly113I | GGCGCC | 1 cut(s) | 129 |
| MnlI | CCTC | 6 cut(s) | 91, 164, 187, 239, 303, 313 |
| MspI | CCGG | 2 cut(s) | 44, 234 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 126, 215 |
| NarI | GGCGCC | 1 cut(s) | 129 |
| NciI | CCSGG | 1 cut(s) | 44 |
| NdeII | GATC | 3 cut(s) | 223, 261, 304 |
| NlaIV | GGNNCC | 3 cut(s) | 130, 154, 175 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PluTI | GGCGCC | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 3 cut(s) | 130, 154, 175 |
| RsaI | GTAC | 3 cut(s) | 107, 154, 350 |
| RsaNI | GTAC | 3 cut(s) | 106, 153, 349 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 3 cut(s) | 223, 261, 304 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SetI | ASST | 5 cut(s) | 69, 231, 246, 261, 303 |
| SfaNI | GCATC | 1 cut(s) | 327 |
| SfoI | GGCGCC | 1 cut(s) | 130 |
| Sse9I | AATT | 1 cut(s) | 327 |
| SsiI | CCGC | 5 cut(s) | 6, 70, 177, 218, 253 |
| SspDI | GGCGCC | 1 cut(s) | 128 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| TaiI | ACGT | 2 cut(s) | 69, 246 |
| TasI | AATT | 1 cut(s) | 327 |
| TauI | GCSGC | 1 cut(s) | 8 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 217 |