Prupe.1G400800_v2.0.a1

Pre-mRNA branch site p14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015163
Physical Location & Seq
Forward (+)
35396108 .. 35396791
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G400800.1

Sequence Viewer

Length: 375 bp
ATGAGCACAATCAGTCTCCGCAAGGTCAATACCCGTCTTCCCCCGGAAGTCAACCGCGTGCTCTACGTCCGCAACCTCCCCTTCAACATCTCCAGCGAGGAGATGTACGACATATTCGGCAAGTACGGCGCCATACGACAGATTCGCATAGGCACGAACAAGGACACCAGAGGAACCGCCTTCGTCGTCTACGAAGACATCTACGACGCCAAAACGGCGGTGGATCATCTCTCCGGCTTCAACGTTGCTAATCGGTATCTGATCGTTCTCTACTACCAGCAGGCCAAGATGAGCAAGAAGTTTGACGCCAAGAAGAAGGAGGACGAAATCGCCAGAATGCAGGAGAAGTACGGCGTCTCCACCAAAGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

125

Amino Acids

14.41

Weight (kDa)

9.57

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12190
fragaria_vesca FvH4_4g01940
malus_domestica MD08G1047500.v1.1
prunus_persica Prupe.1G025000_v2.0.a1 Prupe.1G400800_v2.0.a1
pyrus_communis pycom08g04000
rosa_chinensis RchiOBHm_Chr4g0388901
rosa_laevigata RLG00000010015
rosa_multiflora Rmu_sc0000697.1_g000003 Rmu_sc0005486.1_g000012
rosa_roxburghii Rroxscaffold_5G00335210
rosa_rugosa Rorug03G0320900
rosa_samantha Rh4BG018600 Rh4CG028400 Rh4DG019200
rosa_wichuraiana Rw4G001830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 57
AciI CCGC 5 cut(s) 19, 55, 70, 177, 218
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 231
AcyI GRCGYC 4 cut(s) 129, 207, 306, 354
AfaI GTAC 3 cut(s) 107, 125, 350
AgsI TTSAA 2 cut(s) 85, 241
Alw21I GWGCWC 2 cut(s) 8, 63
Alw26I GTCTC 2 cut(s) 20, 361
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 2 cut(s) 29, 201
Bbv12I GWGCWC 2 cut(s) 8, 63
BceAI ACGGC 3 cut(s) 142, 231, 367
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 20, 361
BfoI RGCGCY 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 130, 175
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 29, 201
BpmI CTGGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 44
BsaHI GRCGYC 4 cut(s) 129, 207, 306, 354
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
BseDI CCNNGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 8, 63
BsiSI CCGG 2 cut(s) 44, 234
BsmAI GTCTC 2 cut(s) 20, 361
BsmBI CGTCTC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 8, 63
Bsp143I GATC 2 cut(s) 223, 261
BspACI CCGC 5 cut(s) 19, 55, 70, 177, 218
BspANI GGCC 1 cut(s) 284
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 130, 175
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 223, 261
BssNI GRCGYC 4 cut(s) 129, 207, 306, 354
BstACI GRCGYC 4 cut(s) 129, 207, 306, 354
BstC8I GCNNGC 2 cut(s) 59, 282
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 2 cut(s) 226, 264
BstMAI GTCTC 2 cut(s) 20, 361
BstMBI GATC 2 cut(s) 223, 261
BstMWI GCNNNNNNNGC 2 cut(s) 126, 215
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 2 cut(s) 29, 201
BsuRI GGCC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 59, 282
CfoI GCGC 1 cut(s) 131
CseI GACGC 3 cut(s) 215, 314, 343
Csp6I GTAC 3 cut(s) 106, 124, 349
CviJI RGCY 2 cut(s) 237, 284
CviKI_1 RGCY 2 cut(s) 237, 284
CviQI GTAC 3 cut(s) 106, 124, 349
DinI GGCGCC 1 cut(s) 130
DpnI GATC 2 cut(s) 225, 263
DpnII GATC 2 cut(s) 223, 261
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 361
FaiI YATR 3 cut(s) 113, 134, 149
FblI GTMKAC 1 cut(s) 189
GlaI GCGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 44, 234
HgaI GACGC 3 cut(s) 215, 314, 343
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 4 cut(s) 129, 207, 306, 354
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 44, 234
Hpy166II GTNNAC 2 cut(s) 52, 190
Hpy188I TCNGA 1 cut(s) 261
Hpy8I GTNNAC 2 cut(s) 52, 190
Hpy99I CGWCG 2 cut(s) 188, 209
HpyAV CCTTC 3 cut(s) 91, 190, 310
HpyCH4IV ACGT 2 cut(s) 66, 243
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 215
HpySE526I ACGT 2 cut(s) 66, 243
Hsp92I GRCGYC 4 cut(s) 129, 207, 306, 354
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 223, 261
LpnPI CCDG 8 cut(s) 57, 106, 181, 247, 266, 290, 326, 346
MaeII ACGT 2 cut(s) 66, 243
MalI GATC 2 cut(s) 225, 263
MboI GATC 2 cut(s) 223, 261
MboII GAAGA 3 cut(s) 29, 206, 325
MhlI GDGCHC 2 cut(s) 8, 63
Mly113I GGCGCC 1 cut(s) 129
MnlI CCTC 4 cut(s) 86, 91, 164, 313
MspI CCGG 2 cut(s) 44, 234
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 342
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 126, 215
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 223, 261
NlaIV GGNNCC 2 cut(s) 130, 175
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 142
PluTI GGCGCC 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 130, 175
RsaI GTAC 3 cut(s) 107, 125, 350
RsaNI GTAC 3 cut(s) 106, 124, 349
Sau3AI GATC 2 cut(s) 223, 261
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 8, 63
SetI ASST 4 cut(s) 27, 69, 78, 246
SfoI GGCGCC 1 cut(s) 130
SsiI CCGC 5 cut(s) 19, 55, 70, 177, 218
SspDI GGCGCC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 42
TaiI ACGT 2 cut(s) 69, 246
TfiI GAWTC 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.