Prupe.1G157200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024588
Physical Location & Seq
Forward (+)
12470713 .. 12473080
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157200.1

Sequence Viewer

Length: 1158 bp
ATGATTATCGAGTACGTGTTAGGTTTTTGTGCAAAGAAGCTTTGTCTACTTTGCGCAAGAGCAAGAACATTAATTTCACCGTTTTTGTCTTCTCTCTTTTCTCGGTGCCCTAGGCTTGGCCAGATTGATCAACCAAGATGGGATGACTTACCTATGGACTGTTTGGTGAATGTGTTGGAAAAAGTTGGCATGAGGTCCTTGCTCTTGGATGTCCCTTTTGTGTGCAAGTCATGGTACAGGGCTAGCCTCCACCCTTTATGCTGGCAACGTCTCATTTTTGTTGACACTGAAACTAAGATGGACCTTGAAACTCATCGACCTTGGCGTTATCACAGTGAAATTGAAGCTGAGATCGACATTCAATCTGATCGTCTCTGCTTCGAATCCTTGATGAGTAGATTTGTATCTCAGTATCAAATTGATGATAGCTGTTTCTCTGATACCGCATTTATAACGTCTGTAGTCAATCGCAGCAGAGGACATGCAACTTTCCTGAGGCTACCTGGATTTTGTCCAGAAGCAGCATTGAAATATGTTGGGGATGTGTGTCATGAACTTAAGGGTTTGTCTTTGCCCAGACGTTTACTGCTTTGTTCATCAAGCATTGTTAAAGAATTGATTGGAAAGTGCAAACATTTGGAGTTGTTGTCACTGGGAGGTAGCCATAATTTGGAGGAGATTCTGTTACAGTTCAGCATGGGATGCTGCAGGAATTTTCTAAACATAAATGTGCCAGCTGTTTTAATGAATAGACAAGGAGCAATGAAGATTCCCTATTTGATTCCTAATGTTAGCTTCCTAAGCAGCTATAATTTGGAGGAAATCCTTGCACAGATCCGCATTCACTGCAAGAACTTTTGCCGTTTAAATATGTCGGGTGCTTTAATCAAAAGAGAAGATGTGGTGGCAATTGTCAACTTGCTTCCTCACATTAAGTACCTAATCCTGAGGAAGGCATACATTGATCGGGGTGATCTTCTCACATTACTGCGAGGCTGCACAGAACTTGTGCTTTTGGATGCAAGGGATTGCTCTGGTTTTGACGAAGGTGATGTTGAAATATCAGTGCTTGCTTCTCATATTGGTAAGTTCAGCTGTGAGGGTTCCAAGTGTGTTGATGACCCTCTTTTGTGGTTGCGTACTCACATAAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

43.81

Weight (kDa)

7.45

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024588)

Species Orthologous Gene IDs
prunus_persica Prupe.1G010600_v2.0.a1 Prupe.1G157200_v2.0.a1 Prupe.1G157300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
Acc16I TGCGCA 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 105
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 1 cut(s) 46
AciI CCGC 2 cut(s) 444, 838
AclWI GGATC 1 cut(s) 829
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 712
AfaI GTAC 4 cut(s) 14, 236, 938, 1141
AfiI CCNNNNNNNGG 3 cut(s) 116, 670, 952
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 5 cut(s) 308, 344, 362, 529, 1058
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 7 cut(s) 40, 347, 429, 737, 795, 807, 1095
AluI AGCT 7 cut(s) 40, 347, 429, 737, 795, 807, 1095
Alw26I GTCTC 2 cut(s) 275, 377
AlwI GGATC 1 cut(s) 829
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 5 cut(s) 471, 521, 705, 804, 996
ApoI RAATTY 1 cut(s) 712
AseI ATTAAT 1 cut(s) 71
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 195, 301
AsuHPI GGTGA 4 cut(s) 69, 178, 983, 1061
AsuII TTCGAA 1 cut(s) 381
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 2 cut(s) 195, 301
AvrII CCTAGG 1 cut(s) 110
AxyI CCTNAGG 2 cut(s) 494, 947
BaeGI GKGCMC 1 cut(s) 110
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 5 cut(s) 483, 533, 692, 816, 983
BccI CCATC 2 cut(s) 132, 292
BceAI ACGGC 1 cut(s) 846
BciT130I CCWGG 1 cut(s) 504
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 275, 377
BfaI CTAG 2 cut(s) 111, 243
BfmI CTRYAG 2 cut(s) 459, 706
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 5 cut(s) 472, 522, 706, 805, 997
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 5 cut(s) 473, 523, 707, 806, 998
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 2 cut(s) 195, 301
BmgT120I GGNCC 2 cut(s) 195, 301
BmiI GGNNCC 2 cut(s) 107, 1105
BmrFI CCNGG 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 2 cut(s) 692, 1009
BmtI GCTAGC 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 800
Bpu14I TTCGAA 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 110, 320
BsaXI ACNNNNNCTCC 4 cut(s) 632, 662, 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 670, 952
Bse1I ACTGG 1 cut(s) 657
Bse21I CCTNAGG 2 cut(s) 494, 947
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 403
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 110, 320
BseGI GGATG 5 cut(s) 148, 214, 547, 707, 1024
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 116, 670, 952
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 4 cut(s) 339, 422, 485, 938
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 5 cut(s) 483, 533, 692, 816, 983
BsgI GTGCAG 1 cut(s) 982
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 116, 670, 952
BsmAI GTCTC 2 cut(s) 275, 377
BsmBI CGTCTC 2 cut(s) 275, 377
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 6 cut(s) 127, 351, 367, 834, 964, 973
BspACI CCGC 2 cut(s) 444, 838
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 4 cut(s) 340, 421, 486, 939
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 107, 1105
BspMAI CTGCAG 1 cut(s) 710
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 2 cut(s) 110, 320
BssMI GATC 6 cut(s) 127, 351, 367, 834, 964, 973
BssT1I CCWWGG 2 cut(s) 110, 320
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 4 cut(s) 81, 161, 335, 690
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 2 cut(s) 702, 846
BstBAI YACGTR 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 4 cut(s) 244, 263, 735, 1071
BstDEI CTNAG 6 cut(s) 294, 348, 408, 494, 800, 947
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 5 cut(s) 148, 214, 547, 707, 1024
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 6 cut(s) 130, 354, 370, 837, 967, 976
BstMAI GTCTC 2 cut(s) 275, 377
BstMBI GATC 6 cut(s) 127, 351, 367, 834, 964, 973
BstMWI GCNNNNNNNGC 3 cut(s) 702, 801, 846
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 2 cut(s) 459, 706
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 5 cut(s) 483, 533, 692, 816, 983
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
Bsu36I CCTNAGG 2 cut(s) 494, 947
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 5 cut(s) 148, 214, 547, 707, 1024
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 5 cut(s) 285, 340, 650, 844, 1071
Cac8I GCNNGC 4 cut(s) 244, 263, 735, 1071
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 195, 301
Csp6I GTAC 4 cut(s) 13, 235, 937, 1140
CviAII CATG 5 cut(s) 190, 231, 482, 551, 697
CviQI GTAC 4 cut(s) 13, 235, 937, 1140
DdeI CTNAG 6 cut(s) 294, 348, 408, 494, 800, 947
DpnI GATC 6 cut(s) 129, 353, 369, 836, 966, 975
DpnII GATC 6 cut(s) 127, 351, 367, 834, 964, 973
DraI TTTAAA 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 110, 320
Eco47I GGWCC 2 cut(s) 195, 301
Eco81I CCTNAGG 2 cut(s) 494, 947
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 2 cut(s) 110, 320
ErhI CCWWGG 2 cut(s) 110, 320
Esp3I CGTCTC 2 cut(s) 275, 377
FaeI CATG 5 cut(s) 193, 234, 485, 554, 700
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 189, 230, 481, 550, 696
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 472, 522, 706, 805, 997
FokI GGATG 5 cut(s) 155, 221, 554, 714, 1031
Fsp4HI GCNGC 5 cut(s) 472, 522, 706, 805, 997
FspBI CTAG 2 cut(s) 111, 243
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 472, 522, 706, 805, 997
HaeIII GGCC 1 cut(s) 120
HhaI GCGC 1 cut(s) 56
Hin1II CATG 5 cut(s) 193, 234, 485, 554, 700
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 283, 916
HindII GTYRAC 2 cut(s) 283, 916
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 4 cut(s) 383, 679, 769, 781
HphI GGTGA 4 cut(s) 69, 178, 983, 1061
Hpy166II GTNNAC 4 cut(s) 47, 283, 584, 916
Hpy188I TCNGA 2 cut(s) 367, 439
Hpy188III TCNNGA 4 cut(s) 493, 515, 551, 946
Hpy8I GTNNAC 4 cut(s) 47, 283, 584, 916
HpyAV CCTTC 2 cut(s) 946, 1040
HpyCH4III ACNGT 4 cut(s) 81, 161, 335, 690
HpyCH4IV ACGT 4 cut(s) 15, 268, 455, 580
HpyCH4V TGCA 9 cut(s) 32, 225, 485, 630, 708, 830, 849, 999, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 702, 801, 846
HpyF3I CTNAG 6 cut(s) 294, 348, 408, 494, 800, 947
HpySE526I ACGT 4 cut(s) 15, 268, 455, 580
Hsp92II CATG 5 cut(s) 193, 234, 485, 554, 700
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 127, 351, 367, 834, 964, 973
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 5 cut(s) 483, 533, 692, 816, 983
LweI GCATC 2 cut(s) 692, 1009
MaeI CTAG 2 cut(s) 111, 243
MaeII ACGT 4 cut(s) 15, 268, 455, 580
MaeIII GTNAC 2 cut(s) 648, 684
MalI GATC 6 cut(s) 129, 353, 369, 836, 966, 975
MboI GATC 6 cut(s) 127, 351, 367, 834, 964, 973
MboII GAAGA 4 cut(s) 81, 778, 908, 968
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 8 cut(s) 72, 339, 417, 614, 667, 712, 811, 909
MluNI TGGCCA 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
MseI TTAA 7 cut(s) 71, 558, 609, 743, 866, 884, 933
MslI CAYNNNNRTG 1 cut(s) 728
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 737, 1095
MspCI CTTAAG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 840
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 702, 801, 846
NdeII GATC 6 cut(s) 127, 351, 367, 834, 964, 973
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 193, 234, 485, 554, 700
NlaIV GGNNCC 2 cut(s) 107, 1105
NmuCI GTSAC 1 cut(s) 648
NsbI TGCGCA 1 cut(s) 55
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 381
PagI TCATGA 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PctI GAATGC 1 cut(s) 840
PfeI GAWTC 4 cut(s) 383, 679, 769, 781
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 5 cut(s) 473, 523, 707, 806, 998
Ppu21I YACGTR 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 71
PsiI TTATAA 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 107, 1105
PspPI GGNCC 2 cut(s) 195, 301
PspPPI RGGWCCY 1 cut(s) 195
PstI CTGCAG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 834
PvuII CAGCTG 2 cut(s) 737, 1095
RsaI GTAC 4 cut(s) 14, 236, 938, 1141
RsaNI GTAC 4 cut(s) 13, 235, 937, 1140
RseI CAYNNNNRTG 1 cut(s) 728
SaqAI TTAA 7 cut(s) 71, 558, 609, 743, 866, 884, 933
SatI GCNGC 5 cut(s) 472, 522, 706, 805, 997
Sau3AI GATC 6 cut(s) 127, 351, 367, 834, 964, 973
Sau96I GGNCC 2 cut(s) 195, 301
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 2 cut(s) 692, 1009
SfcI CTRYAG 2 cut(s) 459, 706
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 2 cut(s) 195, 301
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 8 cut(s) 72, 339, 417, 614, 667, 712, 811, 909
SsiI CCGC 2 cut(s) 444, 838
SspMI CTAG 2 cut(s) 111, 243
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 2 cut(s) 110, 320
TaaI ACNGT 4 cut(s) 81, 161, 335, 690
TaiI ACGT 4 cut(s) 18, 271, 458, 583
TaqI TCGA 4 cut(s) 9, 316, 354, 381
TasI AATT 8 cut(s) 72, 339, 417, 614, 667, 712, 811, 909
TfiI GAWTC 4 cut(s) 383, 679, 769, 781
Tru1I TTAA 7 cut(s) 71, 558, 609, 743, 866, 884, 933
Tru9I TTAA 7 cut(s) 71, 558, 609, 743, 866, 884, 933
TscAI CASTG 5 cut(s) 292, 340, 657, 851, 1071
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 5 cut(s) 471, 521, 705, 804, 996
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 4 cut(s) 567, 585, 761, 779
TspRI CASTG 5 cut(s) 292, 340, 657, 851, 1071
Van91I CCANNNNNTGG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 195, 301
VspI ATTAAT 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 1 cut(s) 712
XceI RCATGY 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 2 cut(s) 111, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.