Prupe.1G157300_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024588
Physical Location & Seq
Forward (+)
12473388 .. 12476515
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157300.1

Sequence Viewer

Length: 915 bp
ATGGCGAATCCCGACCTGCCCCAACCCAAGAAGCTTCGTCAGACGGTTCAATTTCAACCAAGATGGGAAGACCTAAACGTGGACTGTTTGGCAAATGTGTTTGGAAGAGTTGGTATCACGGCATTGCTCTTGAGTGTCCCTTTCGTGTGTAAGTCTTGGTACAGAGCAAGCCTCGACTCTGCATGTTGGCAACGTCTCATTTTGCCTGATGTTGATACTGAGATTGACCTTGGAAATGAGGGATTTTGGAATTCTGACAATGAAATTGAAGCTGTGGTTGACAGAAGACTAGAGCTTTTCCGTTTCGATACCTTGATGCGCAGATTTTTAAGGGGATATCGAATTGATCGTAATTGCTTTTCTGAGACTCAATTCATAATGTTTGTAGTCAATCGTAGCAGAGGACAGGCTACTTTCCTCAGGCTGCCTCCACTCTGTGAAACTGCATTATTGAATCGTGTTGCAGATGTGTGTCATGGACTGAAGGGTTTGTCTTTGCACCGCTGTTCACTGATCTATCCATCAAGCATTATCCCAGAGCTGATTGGAAAGTGTAAACATTTGGAGCTGTTGTCATTGAGGGGGGGCAGTAATAATTTGAAGGAACTCCTTTCACAGATCAGCATTCACTGTAAGAATTTCTGTCGTTTACTTGTGTTGAATGCTGTAATTGGTAGAGAAGATGCATTGGCAATTGTTAACTTGGTTCCTAATATTAAGTACTTGAGCTTGAGGAAGTCATACATACATCGGGATAATCTTGTCACATTATTTCGGTGCTGCAAAGAACTTGTGCTTTTGGATGCTAGGGATTGCTCTGGTTTTGATGGCGGTGATGTTGAAATATTAGCGCTTGCTTCTCAAATTGATAAGTTCAGCTGTGAGGGTTCTAGAAATGGTGACTGGAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

305

Amino Acids

34.61

Weight (kDa)

8.37

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024588)

Species Orthologous Gene IDs
prunus_persica Prupe.1G010600_v2.0.a1 Prupe.1G157200_v2.0.a1 Prupe.1G157300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 24
AciI CCGC 2 cut(s) 502, 831
AcsI RAATTY 2 cut(s) 250, 637
AcuI CTGAAG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 2 cut(s) 161, 722
AfeI AGCGCT 1 cut(s) 852
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 7 cut(s) 50, 56, 269, 454, 601, 661, 842
AluBI AGCT 7 cut(s) 34, 272, 295, 541, 568, 729, 879
AluI AGCT 7 cut(s) 34, 272, 295, 541, 568, 729, 879
Alw26I GTCTC 2 cut(s) 200, 359
Aor51HI AGCGCT 1 cut(s) 852
ApeKI GCWGC 2 cut(s) 424, 780
ApoI RAATTY 2 cut(s) 250, 637
AspLEI GCGC 2 cut(s) 321, 853
AsuHPI GGTGA 2 cut(s) 845, 911
AxyI CCTNAGG 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 75, 292
BbvI GCAGC 2 cut(s) 411, 767
BccI CCATC 3 cut(s) 57, 529, 821
BceAI ACGGC 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 200, 359
BfaI CTAG 3 cut(s) 290, 807, 891
BfoI RGCGCY 1 cut(s) 854
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 2 cut(s) 425, 781
BlsI GCNGC 2 cut(s) 426, 782
BmcAI AGTACT 1 cut(s) 722
BmiI GGNNCC 1 cut(s) 708
BmsI GCATC 3 cut(s) 306, 673, 793
BpiI GAAGAC 2 cut(s) 75, 292
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpuEI CTTGAG 3 cut(s) 151, 745, 751
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 908
Bse21I CCTNAGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 808
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 3 cut(s) 210, 354, 433
BseNI ACTGG 1 cut(s) 908
BseXI GCAGC 2 cut(s) 411, 767
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 200, 359
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 2 cut(s) 624, 667
Bsp143I GATC 3 cut(s) 346, 513, 618
BspACI CCGC 2 cut(s) 502, 831
BspCNI CTCAG 3 cut(s) 211, 355, 432
BspHI TCATGA 1 cut(s) 911
BspLI GGNNCC 1 cut(s) 708
BspMI ACCTGC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 908
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 346, 513, 618
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 46, 86, 632
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 169, 855
BstDEI CTNAG 3 cut(s) 219, 363, 419
BstF5I GGATG 1 cut(s) 808
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 2 cut(s) 321, 853
BstKTI GATC 3 cut(s) 349, 516, 621
BstMAI GTCTC 2 cut(s) 200, 359
BstMBI GATC 3 cut(s) 346, 513, 618
BstNSI RCATGY 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 411, 767
BstV2I GAAGAC 2 cut(s) 75, 292
Bsu36I CCTNAGG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 509, 628
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 169, 855
CciI TCATGA 1 cut(s) 911
CfoI GCGC 2 cut(s) 321, 853
Csp6I GTAC 2 cut(s) 160, 721
CviAII CATG 3 cut(s) 183, 476, 912
CviQI GTAC 2 cut(s) 160, 721
DdeI CTNAG 3 cut(s) 219, 363, 419
DpnI GATC 3 cut(s) 348, 515, 620
DpnII GATC 3 cut(s) 346, 513, 618
DraIII CACNNNGTG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 229
Eco32I GATATC 1 cut(s) 338
Eco47III AGCGCT 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 3 cut(s) 186, 479, 915
FaiI YATR 6 cut(s) 184, 377, 477, 742, 746, 913
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 182, 475, 911
Fnu4HI GCNGC 2 cut(s) 425, 781
FokI GGATG 1 cut(s) 815
Fsp4HI GCNGC 2 cut(s) 425, 781
FspBI CTAG 3 cut(s) 290, 807, 891
FspI TGCGCA 1 cut(s) 320
GlaI GCGC 2 cut(s) 320, 852
GluI GCNGC 2 cut(s) 425, 781
HaeII RGCGCY 1 cut(s) 854
HhaI GCGC 2 cut(s) 321, 853
Hin1II CATG 3 cut(s) 186, 479, 915
Hin6I GCGC 2 cut(s) 319, 851
HinP1I GCGC 2 cut(s) 319, 851
HincII GTYRAC 2 cut(s) 280, 700
HindII GTYRAC 2 cut(s) 280, 700
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 4 cut(s) 7, 176, 367, 454
HpaI GTTAAC 1 cut(s) 700
HphI GGTGA 2 cut(s) 845, 911
Hpy166II GTNNAC 6 cut(s) 82, 280, 509, 557, 650, 700
Hpy188I TCNGA 3 cut(s) 42, 256, 364
Hpy188III TCNNGA 5 cut(s) 11, 130, 752, 891, 912
Hpy8I GTNNAC 6 cut(s) 82, 280, 509, 557, 650, 700
HpyAV CCTTC 2 cut(s) 478, 595
HpyCH4III ACNGT 3 cut(s) 46, 86, 632
HpyCH4IV ACGT 2 cut(s) 78, 193
HpyCH4V TGCA 6 cut(s) 182, 446, 464, 499, 686, 783
HpyF3I CTNAG 3 cut(s) 219, 363, 419
HpySE526I ACGT 2 cut(s) 78, 193
Hsp92II CATG 3 cut(s) 186, 479, 915
HspAI GCGC 2 cut(s) 319, 851
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 3 cut(s) 346, 513, 618
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 7 cut(s) 29, 219, 392, 406, 549, 804, 889
Lsp1109I GCAGC 2 cut(s) 411, 767
LweI GCATC 3 cut(s) 306, 673, 793
MaeI CTAG 3 cut(s) 290, 807, 891
MaeII ACGT 2 cut(s) 78, 193
MaeIII GTNAC 2 cut(s) 763, 899
MalI GATC 3 cut(s) 348, 515, 620
MboI GATC 3 cut(s) 346, 513, 618
MboII GAAGA 4 cut(s) 80, 117, 297, 692
MfeI CAATTG 1 cut(s) 693
MlyI GAGTC 2 cut(s) 170, 361
MnlI CCTC 8 cut(s) 182, 232, 395, 428, 438, 573, 726, 877
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 3 cut(s) 329, 699, 717
MspA1I CMGCKG 2 cut(s) 504, 879
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 2 cut(s) 624, 667
NdeII GATC 3 cut(s) 346, 513, 618
NlaIII CATG 3 cut(s) 186, 479, 915
NlaIV GGNNCC 1 cut(s) 708
NmuCI GTSAC 2 cut(s) 763, 899
NsbI TGCGCA 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 186
PagI TCATGA 1 cut(s) 911
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PctI GAATGC 2 cut(s) 624, 667
PfeI GAWTC 2 cut(s) 7, 454
PkrI GCNGC 2 cut(s) 426, 782
PleI GAGTC 2 cut(s) 170, 361
PpsI GAGTC 2 cut(s) 170, 361
PspN4I GGNNCC 1 cut(s) 708
PvuII CAGCTG 1 cut(s) 879
RsaI GTAC 2 cut(s) 161, 722
RsaNI GTAC 2 cut(s) 160, 721
SaqAI TTAA 3 cut(s) 329, 699, 717
SatI GCNGC 2 cut(s) 425, 781
Sau3AI GATC 3 cut(s) 346, 513, 618
ScaI AGTACT 1 cut(s) 722
SchI GAGTC 2 cut(s) 170, 361
SfaNI GCATC 3 cut(s) 306, 673, 793
SmlI CTYRAG 3 cut(s) 130, 724, 730
SmoI CTYRAG 3 cut(s) 130, 724, 730
SsiI CCGC 2 cut(s) 502, 831
SspI AATATT 2 cut(s) 715, 846
SspMI CTAG 3 cut(s) 290, 807, 891
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 3 cut(s) 46, 86, 632
TaiI ACGT 2 cut(s) 81, 196
TaqI TCGA 3 cut(s) 174, 306, 340
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 2 cut(s) 7, 454
Tru1I TTAA 3 cut(s) 329, 699, 717
Tru9I TTAA 3 cut(s) 329, 699, 717
TscAI CASTG 2 cut(s) 516, 635
TseFI GTSAC 2 cut(s) 763, 899
TseI GCWGC 2 cut(s) 424, 780
Tsp45I GTSAC 2 cut(s) 763, 899
TspDTI ATGAA 2 cut(s) 276, 364
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 516, 635
XapI RAATTY 2 cut(s) 250, 637
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 1 cut(s) 186
XspI CTAG 3 cut(s) 290, 807, 891
ZrmI AGTACT 1 cut(s) 722
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.