Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017756

Physical Location & Seq

Genomic Coordinates Reverse (-)

15999069 .. 16000729

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAACTTCCAGAGCTCTCTTTAGCTCCAACACAGGCACATGTGGTGTTTAAGAAAAGCATTAATGGTTCTAATAATCCATTGGAATCAGCTGAAAGCAACACTTCTAGGAAGAGGAAGCTTTTCCAAGATCACCAACTCCTGAAGACTGAAGCATCTTTTCAAACAAGTGTTGATCTTCAACTTAAAGACCCCCTACCATTAGATTGGGAGCAGTGTCTTGATCTTGAGTCAGGAAAAATGTACTACCTAAACAGAAAGACCTCAAGGAAGAGTTGGAACTGGCCTATGGACCAGGCAGTGAACCTTGAGCTGAACATCTCAACCATCTCAGGTTCAAGTTCTGATCAGCGATCCAGCCCAAGCCTTAAGACAATCGAAGAGGCCAAGAATGAGGAGCAACAAAGTAACATGGTGGCTTTGGCTTGTTTCAATTGCCATCTCCTTGTCATTCTCTCCAAGTCTTCTCCTTGTTGCCCCAACTGCAAATATGTCCACTCACTTCCAACTTCCATCCAACCAAATTATAATTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.15

Weight (kDa)

6.42

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017756)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G182000_v2.0.a1
pyrus_communis	pycom13g28980
rosa_chinensis	RchiOBHm_Chr4g0408971
rosa_laevigata	RLG00000008603
rosa_multiflora	Rmu_sc0001631.1_g000024
rosa_roxburghii	Rroxscaffold_5G00353400
rosa_rugosa	Rorug04G0088800
rosa_samantha	Rh4AG152900 Rh4BG150500 Rh4CG161300 Rh4DG146300
rosa_wichuraiana	Rw4G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AclWI	GGATC	1 cut(s)	348
AcuI	CTGAAG	2 cut(s)	164, 171
AfaI	GTAC	1 cut(s)	245
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	164, 182, 339, 433
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	1 cut(s)	514
AluBI	AGCT	5 cut(s)	16, 26, 92, 121, 313
AluI	AGCT	5 cut(s)	16, 26, 92, 121, 313
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	284, 384
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	152, 456
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	3 cut(s)	335, 447, 521
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	152, 456
BpuEI	CTTGAG	3 cut(s)	248, 250, 329
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	286, 386
BsiHKAI	GWGCWC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	286, 386
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	130, 175, 223, 346, 353
BspANI	GGCC	2 cut(s)	286, 386
BspCNI	CTCAG	1 cut(s)	344
BspPI	GGATC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	5 cut(s)	130, 175, 223, 346, 353
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	3 cut(s)	107, 266, 375
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	133, 178, 226, 349, 356
BstMBI	GATC	5 cut(s)	130, 175, 223, 346, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	294
BstV2I	GAAGAC	2 cut(s)	152, 456
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	286, 386
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	2 cut(s)	221, 306
BtsIMutI	CAGTG	2 cut(s)	221, 306
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	41, 412
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	5 cut(s)	132, 177, 225, 348, 355
DpnII	GATC	5 cut(s)	130, 175, 223, 346, 353
Eam1104I	CTCTTC	3 cut(s)	107, 266, 375
EarI	CTCTTC	3 cut(s)	107, 266, 375
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	164, 171
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	44, 415
FaiI	YATR	5 cut(s)	42, 290, 413, 492, 528
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	2 cut(s)	40, 411
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	286, 386
Hin1II	CATG	2 cut(s)	44, 415
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	86, 230
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	304, 496
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	11, 142, 221, 227, 234
Hpy8I	GTNNAC	2 cut(s)	304, 496
HpyCH4V	TGCA	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	44, 415
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	130, 175, 223, 346, 353
LmnI	GCTCC	3 cut(s)	31, 211, 397
LpnPI	CCDG	9 cut(s)	20, 24, 155, 219, 268, 281, 308, 318, 370
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	5 cut(s)	132, 177, 225, 348, 355
MboI	GATC	5 cut(s)	130, 175, 223, 346, 353
MboII	GAAGA	6 cut(s)	124, 157, 170, 283, 392, 456
MfeI	CAATTG	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	433, 523, 529
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	3 cut(s)	53, 257, 530
MnlI	CCTC	4 cut(s)	108, 274, 376, 388
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	5 cut(s)	51, 63, 186, 369, 538
MspA1I	CMGCKG	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	5 cut(s)	130, 175, 223, 346, 353
NlaIII	CATG	2 cut(s)	44, 415
NspI	RCATGY	1 cut(s)	44
PciI	ACATGT	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	51, 63, 186, 369, 538
Sau3AI	GATC	5 cut(s)	130, 175, 223, 346, 353
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	9 cut(s)	18, 28, 94, 123, 252, 266, 309, 315, 337
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	4 cut(s)	227, 265, 308, 368
SmoI	CTYRAG	4 cut(s)	227, 265, 308, 368
Sse9I	AATT	3 cut(s)	433, 523, 529
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	378
TasI	AATT	3 cut(s)	433, 523, 529
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	5 cut(s)	51, 63, 186, 369, 538
Tru9I	TTAA	5 cut(s)	51, 63, 186, 369, 538
TscAI	CASTG	2 cut(s)	221, 306
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	221, 306
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	63
XceI	RCATGY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.