Rh4DG146300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017756
Physical Location & Seq
Forward (+)
29140221 .. 29142376
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG146300.1

Sequence Viewer

Length: 417 bp
ATGTATATTTTAATACTGGTGTTGCAGTCGGGAAAAGTGTACTATTTGAACAGAAAGACATCGGAAAAGAGTTGGAAGCGGCCATTAAAGGAGGATCAGGAGGAAGCACATCTGGACCTTGAGCTCCACATCTCGAGCACCTTCTTGACCGATGATTCGTGTTCGGAGCAGCGACGTTGCCGAAGAAGCTCAAAGAAAGTAACTGCCGAAGAGGAGGTGATCGGCAGTAGCAATAATAATATGATGCTGGCTTTGGCTTGTTTCAATTGCCATCTGCTTGTGATACTCTCCAAGTCTTCTCCTTGTTGCCCCAACTGCAAATATGTCCACTCATTTCCACTTCCAACTGCCAACCAAAATCTCAACTCAAGTCCCTCAACTTGGTCGATCGAGCTAGCATTATCTAACTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.63

Weight (kDa)

6.88

Isoelectric Point (pI)

80.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017756)

Species Orthologous Gene IDs
prunus_persica Prupe.1G182000_v2.0.a1
pyrus_communis pycom13g28980
rosa_chinensis RchiOBHm_Chr4g0408971
rosa_laevigata RLG00000008603
rosa_multiflora Rmu_sc0001631.1_g000024
rosa_roxburghii Rroxscaffold_5G00353400
rosa_rugosa Rorug04G0088800
rosa_samantha Rh4AG152900 Rh4BG150500 Rh4CG161300 Rh4DG146300
rosa_wichuraiana Rw4G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 80
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 2 cut(s) 49, 265
AluBI AGCT 3 cut(s) 124, 189, 394
AluI AGCT 3 cut(s) 124, 189, 394
Alw21I GWGCWC 2 cut(s) 126, 140
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 229
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 126, 140
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 279
BfaI CTAG 1 cut(s) 395
BisI GCNGC 2 cut(s) 80, 170
BlsI GCNGC 2 cut(s) 81, 171
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 140, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 126, 140
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 126, 140
Bsp143I GATC 3 cut(s) 94, 219, 387
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 82
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 21
BssMI GATC 3 cut(s) 94, 219, 387
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 249, 396
BstDEI CTNAG 1 cut(s) 409
BstKTI GATC 3 cut(s) 97, 222, 390
BstMBI GATC 3 cut(s) 94, 219, 387
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 186, 315
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 249, 396
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 6 cut(s) 82, 124, 189, 251, 257, 394
CviKI_1 RGCY 6 cut(s) 82, 124, 189, 251, 257, 394
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 409
DpnI GATC 3 cut(s) 96, 221, 389
DpnII GATC 3 cut(s) 94, 219, 387
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 126
FaiI YATR 3 cut(s) 6, 242, 324
FaqI GGGAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 80, 170
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 80, 170
FspBI CTAG 1 cut(s) 395
GluI GCNGC 2 cut(s) 80, 170
HaeIII GGCC 1 cut(s) 82
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 40, 328
Hpy188I TCNGA 3 cut(s) 64, 166, 412
Hpy188III TCNNGA 5 cut(s) 30, 98, 113, 133, 145
Hpy8I GTNNAC 2 cut(s) 40, 328
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 25, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 315
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 1 cut(s) 175
Kzo9I GATC 3 cut(s) 94, 219, 387
LmnI GCTCC 2 cut(s) 129, 166
LpnPI CCDG 4 cut(s) 2, 83, 98, 233
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 96, 221, 389
MboI GATC 3 cut(s) 94, 219, 387
MboII GAAGA 3 cut(s) 195, 221, 288
MfeI CAATTG 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 126, 140
MluCI AATT 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 53, 368
MnlI CCTC 5 cut(s) 85, 94, 205, 208, 385
MseI TTAA 2 cut(s) 11, 86
MunI CAATTG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 186, 315
NdeII GATC 3 cut(s) 94, 219, 387
NheI GCTAGC 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 133
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 81, 171
Ple19I CGATCG 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 115
PvuI CGATCG 1 cut(s) 390
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 11, 86
SatI GCNGC 2 cut(s) 80, 170
Sau3AI GATC 3 cut(s) 94, 219, 387
Sau96I GGNCC 1 cut(s) 115
SduI GDGCHC 2 cut(s) 126, 140
SetI ASST 7 cut(s) 120, 126, 143, 178, 191, 219, 396
SfaNI GCATC 1 cut(s) 234
Sfr274I CTCGAG 1 cut(s) 133
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 133
SmlI CTYRAG 3 cut(s) 119, 133, 367
SmoI CTYRAG 3 cut(s) 119, 133, 367
Sse9I AATT 1 cut(s) 265
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 126
TaiI ACGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 134, 386, 390
TaqII GACCGA 1 cut(s) 164
TasI AATT 1 cut(s) 265
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 11, 86
Tru9I TTAA 2 cut(s) 11, 86
TseI GCWGC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 133
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.