Prupe.1G198200_v2.0.a1

3beta-hydroxysteroid-dehydrogenase decarboxylase isoform

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
19000185 .. 19007619
7435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G198200.3

Sequence Viewer

Length: 1770 bp
ATGGCGATGGACGATCGGTTAGCGGAGCTGAACCCTAAGCCGAGAACCTGCGTGGTCTTCGGTGGCAGAGGCTTCCTCGGGAGATCGCTGGTCCTCAGGCTCTTGAAACTCGGTAAGTGGATCGTTCGAGTCGCCGATTCGACTCAGTCTCTCCATCTCGATCCCTCCGAGCGCGACTCGCTCCTTTCGCAAGCTCTCTCCTCTGGCATCGCTTCCTTACATGGCGTCGATGTTCGCGACAAGTCTCAAATCATCACTGCTATCGAAGGTTCATCTGTAGTGTTCTATTTCGATGGGGCTGATTTACGTACAGACGATTTTTACCACTGCTATATGATTGTTGTTCAAGGTGCGAAAAATGTTATCAGTGCTTGTCGGGAGTGCAAAGTTAGACGGCTAATATACAACAGTTCTGCAGATGTAGTTTTTGATGGATCGCATGATATAAATAACGGAGATGAATCCTTGCCTTACCCTTGGAAATTTGATGATATGTTGAGTGACTTCAAGGCCCAAGCAGAAGCACTTGTCCTGCGTTCTAATGACATTGATGGTCTTTTAACATGTGCACTTCGGCCTAGCAATGTATTTGGACATGGAGACTCTCATCTTGTGCCATTTTTAGTTAATTTGGCAAAATCTGGCTGGGGAAAGTTTATTATAGGGAGTGGCGAAAACAGATCGGATTTTACATACGCTGAGAATGTTACTCATGCTCATATCTGTGCAGAAGAAGCTCTGGATAACCGGATGGTCTCCGCAGCTGGAAAGGCTTTTTTCATCACAAATCTTGAGCCTGCAAATTTTTGGGAGTTTGTAACACTCATCTTGGATGGCCTGGGATATCAAAGGCCATTAGTGAAAGTTCCTGCTAAGATGGCTCGGTATATTCTATTGTTCTTCAAATTGATGACTGAAAAGTACGGATTGATAAAACACAACCATTCAATGTCAGCTCATTACATTCAATTAGCTTCACATACTAGAACTTTTGACTGCACTGCTGCTCGAAACCAGATTGGGTACTCACCAGTTGTCTCACTGGAAGAGGGTGTCACATTAACCATTGGATCATTCTCTCATTTAGCCAAATATTCATCTTTCACAAGTTACAGTGACTTTAATGAGCAATCAAAAGTGGAGAAGCTGCTAGGCAGTGGAGAAGTTGCAGACATTTTGCTGTGGCGTGATGAGAAGAAATCTTTTACTTATTTTCTTGCTTTGAGTCTATTGTTTTACTGGTTTTTCCTTTGTGGAAGAACTTTTGCCTCATCTGTATCCAAGCTTCTGCTTTTAGTTTCATTTGGCCTTTATGGATATGGAATTCTACCACCAAAGATATTGGGTCTTACCGTCAAGAGTTTATCTTTATCTTGTTTTGAGATTCCTAAAATGGTAGTGAAAGACATGATTGCAACCATAGCATATTTGTGGAACAGAGGGGTTGGTTATATGAGACAACTGGCCCAAGGGGATGATTGGGATATTTTCTTCAAGTTTGCAGCTTCCCTCTATTTTCTCAAGCTGATTTCGTCACAAGCCTTGACTGTGGTGATAGGTGTAGCACTGGTGTTCGCTTTCACTCTGTTTTTCATTTATGAGCAGTATGAATCAGAGATAGATGGATTCGTGAAGCTTCTGTTCAATAGTACAATGTTGGTTTTTGGATCGCTGAGAACAAATGTACCTGCTTCTGTGCAACTATTTCTTGAAAACCATGGAATTTGGCGTCATGGTAAAGGGCATGCGACAATTAAGCATCAGAAATAG
Functional Annotation

Protein Analysis

590

Amino Acids

65.96

Weight (kDa)

7.63

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 56, 1696
AccII CGCG 2 cut(s) 174, 237
AciI CCGC 2 cut(s) 23, 759
AclWI GGATC 5 cut(s) 128, 155, 442, 1078, 1675
AcsI RAATTY 4 cut(s) 482, 802, 1323, 1722
AcyI GRCGYC 2 cut(s) 225, 1729
AfaI GTAC 5 cut(s) 310, 923, 1025, 1651, 1686
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 9 cut(s) 106, 347, 508, 904, 948, 968, 1495, 1645, 1712
AjnI CCWGG 1 cut(s) 837
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 6 cut(s) 153, 249, 594, 760, 1042, 1450
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 5 cut(s) 128, 155, 442, 1078, 1675
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 6 cut(s) 510, 575, 835, 851, 1306, 1464
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 4 cut(s) 761, 1004, 1147, 1502
ApoI RAATTY 4 cut(s) 482, 802, 1323, 1722
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 91, 511, 1465
AsuHPI GGTGA 2 cut(s) 1020, 1564
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 1668, 1701
BarI GAAGNNNNNNTAC 2 cut(s) 1269, 1301
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 4 cut(s) 773, 991, 1134, 1514
BccI CCATC 8 cut(s) 162, 287, 425, 545, 745, 827, 871, 1616
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 839
BciVI GTATCC 1 cut(s) 1288
BcoDI GTCTC 6 cut(s) 153, 249, 594, 760, 1042, 1450
BfaI CTAG 3 cut(s) 579, 984, 1151
BfmI CTRYAG 2 cut(s) 276, 414
BfuAI ACCTGC 2 cut(s) 56, 1696
BfuI GTATCC 1 cut(s) 1288
BisI GCNGC 4 cut(s) 762, 1005, 1148, 1503
BlsI GCNGC 4 cut(s) 763, 1006, 1149, 1504
Bme1390I CCNGG 1 cut(s) 839
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 91, 511, 1465
BmrFI CCNGG 1 cut(s) 839
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 4 cut(s) 60, 92, 161, 193
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 812, 1505
BsaAI YACGTR 1 cut(s) 308
BsaHI GRCGYC 2 cut(s) 225, 1729
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 5 cut(s) 76, 476, 838, 1468, 1717
BsaWI WCCGGW 1 cut(s) 747
Bse1I ACTGG 5 cut(s) 1031, 1047, 1244, 1467, 1572
Bse21I CCTNAGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 839
BseDI CCNNGG 5 cut(s) 76, 476, 838, 1468, 1717
BseGI GGATG 3 cut(s) 756, 838, 1480
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 4 cut(s) 109, 158, 690, 1664
BseNI ACTGG 5 cut(s) 1031, 1047, 1244, 1467, 1572
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 4 cut(s) 773, 991, 1134, 1514
BseYI CCCAGC 1 cut(s) 645
BsgI GTGCAG 2 cut(s) 747, 982
Bsh1236I CGCG 2 cut(s) 174, 237
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 6 cut(s) 512, 577, 837, 853, 1308, 1466
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 748
BsmAI GTCTC 6 cut(s) 153, 249, 594, 760, 1042, 1450
BsnI GGCC 6 cut(s) 512, 577, 837, 853, 1308, 1466
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
Bsp19I CCATGG 1 cut(s) 1717
Bsp68I TCGCGA 1 cut(s) 237
BspACI CCGC 2 cut(s) 23, 759
BspANI GGCC 6 cut(s) 512, 577, 837, 853, 1308, 1466
BspCNI CTCAG 4 cut(s) 108, 157, 691, 1665
BspFNI CGCG 2 cut(s) 174, 237
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 2 cut(s) 56, 1696
BspPI GGATC 5 cut(s) 128, 155, 442, 1078, 1675
BspTNI GGTCTC 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 5 cut(s) 1031, 1047, 1244, 1467, 1572
BssECI CCNNGG 5 cut(s) 76, 476, 838, 1468, 1717
BssMI GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
BssNI GRCGYC 2 cut(s) 225, 1729
BssT1I CCWWGG 3 cut(s) 476, 1468, 1717
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 4 cut(s) 410, 1115, 1354, 1549
Bst6I CTCTTC 1 cut(s) 1041
BstACI GRCGYC 2 cut(s) 225, 1729
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 192, 798, 1746
BstDEI CTNAG 6 cut(s) 36, 95, 144, 699, 873, 1673
BstDSI CCRYGG 1 cut(s) 1717
BstF5I GGATG 3 cut(s) 756, 838, 1480
BstFNI CGCG 2 cut(s) 174, 237
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 8 cut(s) 16, 86, 123, 163, 437, 683, 1073, 1670
BstMAI GTCTC 6 cut(s) 153, 249, 594, 760, 1042, 1450
BstMBI GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 6 cut(s) 178, 187, 734, 770, 878, 1421
BstNI CCWGG 1 cut(s) 839
BstNSI RCATGY 2 cut(s) 567, 1748
BstSCI CCNGG 1 cut(s) 837
BstSFI CTRYAG 2 cut(s) 276, 414
BstSLI GKGCMC 1 cut(s) 571
BstSNI TACGTA 1 cut(s) 308
BstUI CGCG 2 cut(s) 174, 237
BstV1I GCAGC 4 cut(s) 773, 991, 1134, 1514
BstV2I GAAGAC 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 6 cut(s) 512, 577, 837, 853, 1308, 1466
BtgI CCRYGG 1 cut(s) 1717
BtgZI GCGATG 2 cut(s) 20, 193
BtsCI GGATG 3 cut(s) 756, 838, 1480
BtsI GCAGTG 4 cut(s) 255, 325, 999, 1162
BtsIMutI CAGTG 8 cut(s) 255, 325, 373, 999, 1040, 1120, 1162, 1565
BtuMI TCGCGA 1 cut(s) 237
BveI ACCTGC 2 cut(s) 56, 1696
Cac8I GCNNGC 3 cut(s) 192, 798, 1746
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 3 cut(s) 91, 511, 1465
CseI GACGC 2 cut(s) 214, 1718
Csp6I GTAC 5 cut(s) 309, 922, 1024, 1650, 1685
CviAII CATG 9 cut(s) 221, 440, 564, 596, 713, 1408, 1718, 1733, 1745
CviQI GTAC 5 cut(s) 309, 922, 1024, 1650, 1685
DdeI CTNAG 6 cut(s) 36, 95, 144, 699, 873, 1673
DpnI GATC 8 cut(s) 15, 85, 122, 162, 436, 682, 1072, 1669
DpnII GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
Eam1104I CTCTTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 1041
Eco105I TACGTA 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 476, 1468, 1717
Eco31I GGTCTC 1 cut(s) 760
Eco32I GATATC 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 1323
EcoRII CCWGG 1 cut(s) 837
EcoRV GATATC 1 cut(s) 845
EcoT14I CCWWGG 3 cut(s) 476, 1468, 1717
ErhI CCWWGG 3 cut(s) 476, 1468, 1717
FaeI CATG 9 cut(s) 224, 443, 567, 599, 716, 1411, 1721, 1736, 1748
FatI CATG 9 cut(s) 220, 439, 563, 595, 712, 1407, 1717, 1732, 1744
Fnu4HI GCNGC 4 cut(s) 762, 1005, 1148, 1503
FokI GGATG 3 cut(s) 763, 845, 1487
Fsp4HI GCNGC 4 cut(s) 762, 1005, 1148, 1503
FspBI CTAG 3 cut(s) 579, 984, 1151
GlaI GCGC 1 cut(s) 173
GluI GCNGC 4 cut(s) 762, 1005, 1148, 1503
GsaI CCCAGC 1 cut(s) 649
HaeIII GGCC 6 cut(s) 512, 577, 837, 853, 1308, 1466
HapII CCGG 1 cut(s) 748
HgaI GACGC 2 cut(s) 214, 1718
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 2 cut(s) 225, 1729
Hin1II CATG 9 cut(s) 224, 443, 567, 599, 716, 1411, 1721, 1736, 1748
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 1283, 1634
HpaII CCGG 1 cut(s) 748
HphI GGTGA 2 cut(s) 1020, 1564
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 4 cut(s) 169, 685, 1615, 1764
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 4 cut(s) 410, 1115, 1354, 1549
HpyCH4IV ACGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 6 cut(s) 178, 187, 734, 770, 878, 1421
HpyF3I CTNAG 6 cut(s) 36, 95, 144, 699, 873, 1673
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 2 cut(s) 225, 1729
Hsp92II CATG 9 cut(s) 224, 443, 567, 599, 716, 1411, 1721, 1736, 1748
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
LmnI GCTCC 2 cut(s) 25, 186
Lsp1109I GCAGC 4 cut(s) 773, 991, 1134, 1514
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 579, 984, 1151
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 7 cut(s) 500, 706, 817, 1054, 1109, 1115, 1533
MalI GATC 8 cut(s) 15, 85, 122, 162, 436, 682, 1072, 1669
MboI GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
MboII GAAGA 7 cut(s) 49, 743, 892, 1058, 1207, 1269, 1483
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 8 cut(s) 482, 628, 802, 905, 968, 1323, 1722, 1752
MlyI GAGTC 5 cut(s) 136, 138, 170, 596, 1234
MnlI CCTC 9 cut(s) 62, 86, 104, 175, 211, 1042, 1279, 1433, 1520
MseI TTAA 5 cut(s) 560, 627, 1061, 1122, 1755
MslI CAYNNNNRTG 2 cut(s) 723, 1429
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 1 cut(s) 839
MvaI CCWGG 1 cut(s) 839
MvnI CGCG 2 cut(s) 174, 237
MwoI GCNNNNNNNGC 6 cut(s) 178, 187, 734, 770, 878, 1421
NcoI CCATGG 1 cut(s) 1717
NdeII GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
NlaIII CATG 9 cut(s) 224, 443, 567, 599, 716, 1411, 1721, 1736, 1748
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 4 cut(s) 500, 1054, 1115, 1533
NruI TCGCGA 1 cut(s) 237
NspI RCATGY 2 cut(s) 567, 1748
PaeI GCATGC 1 cut(s) 1748
PciI ACATGT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 234
PfeI GAWTC 5 cut(s) 137, 461, 1384, 1610, 1626
PflFI GACNNNGTC 1 cut(s) 145
PkrI GCNGC 4 cut(s) 763, 1006, 1149, 1504
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 5 cut(s) 136, 137, 170, 596, 1233
PpsI GAGTC 5 cut(s) 136, 137, 170, 596, 1233
Ppu21I YACGTR 1 cut(s) 308
PscI ACATGT 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 837
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 1 cut(s) 837
PspPI GGNCC 3 cut(s) 91, 511, 1465
PstI CTGCAG 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 145
PvuI CGATCG 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 764
RruI TCGCGA 1 cut(s) 237
RsaI GTAC 5 cut(s) 310, 923, 1025, 1651, 1686
RsaNI GTAC 5 cut(s) 309, 922, 1024, 1650, 1685
RseI CAYNNNNRTG 2 cut(s) 723, 1429
SaqAI TTAA 5 cut(s) 560, 627, 1061, 1122, 1755
SatI GCNGC 4 cut(s) 762, 1005, 1148, 1503
Sau3AI GATC 8 cut(s) 13, 83, 120, 160, 434, 680, 1070, 1667
Sau96I GGNCC 3 cut(s) 91, 511, 1465
SchI GAGTC 5 cut(s) 136, 138, 170, 596, 1234
ScrFI CCNGG 1 cut(s) 839
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 2 cut(s) 276, 414
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 723, 1429
SmlI CTYRAG 2 cut(s) 791, 1520
SmoI CTYRAG 2 cut(s) 791, 1520
SnaBI TACGTA 1 cut(s) 308
SphI GCATGC 1 cut(s) 1748
Sse9I AATT 8 cut(s) 482, 628, 802, 905, 968, 1323, 1722, 1752
SsiI CCGC 2 cut(s) 23, 759
SspI AATATT 1 cut(s) 1094
SspMI CTAG 3 cut(s) 579, 984, 1151
StyD4I CCNGG 1 cut(s) 837
StyI CCWWGG 3 cut(s) 476, 1468, 1717
TaaI ACNGT 4 cut(s) 410, 1115, 1354, 1549
TaiI ACGT 1 cut(s) 310
TaqI TCGA 7 cut(s) 127, 140, 159, 228, 264, 291, 1009
TasI AATT 8 cut(s) 482, 628, 802, 905, 968, 1323, 1722, 1752
TatI WGTACW 1 cut(s) 1649
TfiI GAWTC 5 cut(s) 137, 461, 1384, 1610, 1626
Tru1I TTAA 5 cut(s) 560, 627, 1061, 1122, 1755
Tru9I TTAA 5 cut(s) 560, 627, 1061, 1122, 1755
TscAI CASTG 8 cut(s) 262, 332, 373, 1006, 1047, 1120, 1162, 1572
TseFI GTSAC 4 cut(s) 500, 1054, 1115, 1533
TseI GCWGC 4 cut(s) 761, 1004, 1147, 1502
Tsp45I GTSAC 4 cut(s) 500, 1054, 1115, 1533
TspDTI ATGAA 7 cut(s) 261, 474, 769, 1086, 1290, 1582, 1623
TspGWI ACGGA 2 cut(s) 468, 939
TspRI CASTG 8 cut(s) 262, 332, 373, 1006, 1047, 1120, 1162, 1572
Tth111I GACNNNGTC 1 cut(s) 145
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 4 cut(s) 482, 802, 1323, 1722
XceI RCATGY 2 cut(s) 567, 1748
XspI CTAG 3 cut(s) 579, 984, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.