Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018331

Physical Location & Seq

Genomic Coordinates Forward (+)

23721569 .. 23723274

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g27490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGTATTACTGGTTTTTCCTTTCTGGAAGAACTTTTGCCTCATCTATGTCCAAGCTTCTGCTGTTTGTTTCATTTGGCCTTTATGGATACAGGATTCTACCACCCAAGATGTTGGGTTTTACCCTTAAGACGCTATCTTTATCTTGTTTTGAGATTCCTGAAACGGTAGTGAAAGATAAGATAGCAAGCATAGCATATTTGTGGAACAAAGGGGTTTGTTATTTGAGATTACTGGCCCGAGGACATGGCTGGGATATTTTCTTCAAGTTTGCAGCATCCCTCTTTTTCCTCAAGTTGATTTTGTCTCAAGCCTTGACTGTGTTAATAGGTGTAGCGCTGGTGTTGGCCTTCACCCTATTTTTCGTTTGTGAACAATATGAATCGGAAATAGATGGATTGGCAAAGCTCCTGTTCAACGGATTCGTATCAGTTTCTGAGTCATTGAGAAGAAAACTACCTGCTTCTATGCAACTGTATCTTGAAAAACATGGAATCTTGCAGCACGATAAAGTTTGGGTGAAGGAATCAAGCTTTGCATTGAGTGGGAAAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

9.34

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43420
malus_domestica	MD04G1045100.v1.1
prunus_persica	Prupe.1G198200_v2.0.a1 Prupe.1G198200_v2.0.a1 Prupe.1G198200_v2.0.a1 Prupe.1G198200_v2.0.a1 Prupe.1G198200_v2.0.a1
pyrus_communis	pycom04g03880 pycom13g27490 pycom849g00010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AfeI	AGCGCT	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	268, 418, 485
AluBI	AGCT	3 cut(s)	58, 409, 534
AluI	AGCT	3 cut(s)	58, 409, 534
Alw26I	GTCTC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	240
Aor51HI	AGCGCT	1 cut(s)	339
AoxI	GGCC	3 cut(s)	79, 237, 348
ApeKI	GCWGC	2 cut(s)	275, 502
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	346, 532
AvaI	CYCGRG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	287, 514
BccI	CCATC	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	276, 503
BlsI	GCNGC	2 cut(s)	277, 504
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	278, 294
BsaBI	GATNNNNATC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	17, 240
Bse8I	GATNNNNATC	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	17, 240
BseXI	GCAGC	2 cut(s)	287, 514
BseYI	CCCAGC	1 cut(s)	252
BshFI	GGCC	3 cut(s)	81, 239, 350
BsiHKCI	CYCGRG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	3 cut(s)	81, 239, 350
BsoBI	CYCGRG	1 cut(s)	240
BspANI	GGCC	3 cut(s)	81, 239, 350
BspCNI	CTCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	469
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	17, 240
BssECI	CCNNGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	169, 322, 477
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	287, 514
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	81, 239, 350
BtsCI	GGATG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	248, 491
CviJI	RGCY	8 cut(s)	58, 81, 239, 252, 314, 350, 409, 534
CviKI_1	RGCY	8 cut(s)	58, 81, 239, 252, 314, 350, 409, 534
DdeI	CTNAG	1 cut(s)	438
Eco47III	AGCGCT	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	240
FaeI	CATG	2 cut(s)	251, 494
FaiI	YATR	8 cut(s)	50, 87, 194, 199, 249, 381, 470, 492
FatI	CATG	2 cut(s)	247, 490
Fnu4HI	GCNGC	2 cut(s)	276, 503
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	276, 503
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	276, 503
GsaI	CCCAGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	81, 239, 350
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	251, 494
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	2 cut(s)	56, 532
HinfI	GANTC	7 cut(s)	97, 157, 383, 423, 440, 495, 527
HphI	GGTGA	2 cut(s)	346, 532
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	388, 439
Hpy188III	TCNNGA	3 cut(s)	27, 161, 482
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	361, 517
HpyCH4III	ACNGT	3 cut(s)	169, 322, 477
HpyCH4V	TGCA	4 cut(s)	275, 472, 502, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	251, 494
HspAI	GCGC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	8 cut(s)	12, 79, 174, 221, 238, 326, 425, 474
Lsp1109I	GCAGC	2 cut(s)	287, 514
LweI	GCATC	1 cut(s)	287
MboII	GAAGA	3 cut(s)	42, 256, 462
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	4 cut(s)	52, 236, 293, 302
MseI	TTAA	2 cut(s)	129, 326
MslI	CAYNNNNRTG	1 cut(s)	202
MspCI	CTTAAG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	251, 494
PfeI	GAWTC	6 cut(s)	97, 157, 383, 423, 495, 527
PkrI	GCNGC	2 cut(s)	277, 504
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	129, 326
SatI	GCNGC	2 cut(s)	276, 503
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	449
SetI	ASST	5 cut(s)	60, 334, 411, 463, 536
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	202
SmlI	CTYRAG	3 cut(s)	128, 293, 309
SmoI	CTYRAG	3 cut(s)	128, 293, 309
TaaI	ACNGT	3 cut(s)	169, 322, 477
TfiI	GAWTC	6 cut(s)	97, 157, 383, 423, 495, 527
Tru1I	TTAA	2 cut(s)	129, 326
Tru9I	TTAA	2 cut(s)	129, 326
TseI	GCWGC	2 cut(s)	275, 502
TspDTI	ATGAA	2 cut(s)	63, 396
TspGWI	ACGGA	1 cut(s)	435
Vha464I	CTTAAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.