Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0022517

Physical Location & Seq

Genomic Coordinates Forward (+)

24156493 .. 24160053

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G228500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCATGATCCATCAATCGATTCCATACGTCCGCTTCAACGTGGGCCTCCTAATCCAACCAATGGCCTATTCGCCGTCAACTTCGACCCAGACTTCACAGTCCAAAGACTTGACCCTCTCAAATATCCCACGACAGCAATAGACAGCGACCTTACGTCAATGCCCAGCAAAATGCCGCAAATCCAAACAGAAATTACGTCAATACCCAACAACAGATGGTTTCATACGCACAACAAATATGCTGTTGTAGAGGTGATTATCAACCTGTCCTGGATACATGGAAGTAACTGGGGGTTAAAACCTGCCAAGTTTATGGCCTTGACTGGAGGCGGCACTAATTTTGCACTGCAATATGCAGATACTTGGGCAATGCGTGGGGGAAGATATAAATTAGGGAGCAACTACTCTGGGAGCAGAACTTTTGTTATGGAATTTGAATCCGACTGGACAAAACACAGGAAATTGCCAGCATATACTGCTCATGTGATGCGTTCTGCAACATCCTTTATGCCTTGGTCTTGTAAAATCCCTATAGGTGACGGATATCACGAATTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

9.01

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022517)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G228500_v2.0.a1
rosa_laevigata	RLG00000006964
rosa_samantha	Rh4BG307700 Rh4DG305300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	3 cut(s)	35, 179, 333
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	434, 554
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	41, 440
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	3 cut(s)	47, 67, 318
ApoI	RAATTY	2 cut(s)	434, 554
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	268, 551
BccI	CCATC	2 cut(s)	22, 213
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	274
BciVI	GTATCC	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	179, 334
BlsI	GCNGC	2 cut(s)	180, 335
Bme1390I	CCNGG	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	296, 331, 452
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	296, 331, 452
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	3 cut(s)	49, 69, 320
BshVI	ATCGAT	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	3 cut(s)	49, 69, 320
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	3 cut(s)	35, 179, 333
BspANI	GGCC	3 cut(s)	49, 69, 320
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	296, 331, 452
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	49, 69, 320
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	347
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	471
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	3 cut(s)	8, 281, 485
CviJI	RGCY	4 cut(s)	5, 49, 69, 320
CviKI_1	RGCY	4 cut(s)	5, 49, 69, 320
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DrdI	GACNNNNNNGTC	1 cut(s)	101
DriI	GACNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	3 cut(s)	11, 284, 488
FatI	CATG	3 cut(s)	7, 280, 484
Fnu4HI	GCNGC	2 cut(s)	179, 334
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	179, 334
GluI	GCNGC	2 cut(s)	179, 334
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	49, 69, 320
Hin1II	CATG	3 cut(s)	11, 284, 488
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	23, 440
HphI	GGTGA	2 cut(s)	268, 551
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	8, 551
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	4 cut(s)	31, 43, 158, 200
HpyCH4V	TGCA	4 cut(s)	347, 352, 359, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpySE526I	ACGT	4 cut(s)	31, 43, 158, 200
Hsp92II	CATG	3 cut(s)	11, 284, 488
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	399, 414
LweI	GCATC	1 cut(s)	480
MaeII	ACGT	4 cut(s)	31, 43, 158, 200
MaeIII	GTNAC	2 cut(s)	287, 539
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	396
MluCI	AATT	6 cut(s)	195, 340, 392, 434, 464, 554
MmeI	TCCRAC	2 cut(s)	83, 468
MnlI	CCTC	4 cut(s)	60, 129, 247, 323
MseI	TTAA	2 cut(s)	299, 562
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	11, 284, 488
NmuCI	GTSAC	1 cut(s)	539
PagI	TCATGA	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	23, 440
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	180, 335
Psp6I	CCWGG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	299, 562
SatI	GCNGC	2 cut(s)	179, 334
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	9 cut(s)	34, 46, 156, 161, 203, 258, 270, 307, 541
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	534
Sse9I	AATT	6 cut(s)	195, 340, 392, 434, 464, 554
SsiI	CCGC	3 cut(s)	35, 179, 333
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	4 cut(s)	34, 46, 161, 203
TaqI	TCGA	2 cut(s)	21, 87
TasI	AATT	6 cut(s)	195, 340, 392, 434, 464, 554
TauI	GCSGC	2 cut(s)	181, 336
TfiI	GAWTC	2 cut(s)	23, 440
Tru1I	TTAA	2 cut(s)	299, 562
Tru9I	TTAA	2 cut(s)	299, 562
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	434, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.