Rh4DG305300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
52742022 .. 52743004
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG305300.1

Sequence Viewer

Length: 342 bp
ATGACCGGTTCTGGGCGAGCTGGAATTCTTGCATATGTGCATGTATTTTCAGTCTGTCTTATTTGTCGGTGTGGGATGTTGGTGATTATATATCATGGAAGTTACAGGGGGCTAAAACCTGCCAAGTATATGGCATTGACTGACACTCGGGTCATGTGTGGAGGAACAAACAACTCAGAAAGCAACTACTCTTGGAGCAGAATTTTTGTTATGGAATTAGGACCTGACTGGACAAAACATAGAAAATTGCCAGCATATACTGCTCATGTGATGCGTTCTGCAACATTTTTTATGCCTTGGTCTTGTAAAATTATAGGTGACGGATATCACGAACTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

9.25

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022517)

Species Orthologous Gene IDs
prunus_persica Prupe.1G228500_v2.0.a1
rosa_laevigata RLG00000006964
rosa_samantha Rh4BG307700 Rh4DG305300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 24, 201
AfiI CCNNNNNNNGG 1 cut(s) 12
AgeI ACCGGT 1 cut(s) 5
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 147
ApoI RAATTY 2 cut(s) 24, 201
AsiGI ACCGGT 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 94, 329
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 221
BmsI GCATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 18, 252
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 18, 252
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 221
CspAI ACCGGT 1 cut(s) 5
CviAII CATG 4 cut(s) 41, 95, 154, 266
CviJI RGCY 2 cut(s) 20, 112
CviKI_1 RGCY 2 cut(s) 20, 112
DdeI CTNAG 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 296
Eco32I GATATC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 24
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 4 cut(s) 44, 98, 157, 269
FatI CATG 4 cut(s) 40, 94, 153, 265
FauNDI CATATG 1 cut(s) 34
FokI GGATG 1 cut(s) 88
HapII CCGG 1 cut(s) 6
Hin1II CATG 4 cut(s) 44, 98, 157, 269
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 94, 329
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4V TGCA 3 cut(s) 32, 40, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 4 cut(s) 44, 98, 157, 269
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 7 cut(s) 6, 19, 91, 132, 214, 237, 264
LweI GCATC 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 101, 317
MluCI AATT 5 cut(s) 24, 201, 215, 245, 309
MnlI CCTC 1 cut(s) 155
MseI TTAA 1 cut(s) 340
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 34
NlaIII CATG 4 cut(s) 44, 98, 157, 269
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 5
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
PspPI GGNCC 1 cut(s) 221
PspPPI RGGWCCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 221
SetI ASST 4 cut(s) 22, 121, 226, 319
SfaNI GCATC 1 cut(s) 261
SinI GGWCC 1 cut(s) 221
Sse9I AATT 5 cut(s) 24, 201, 215, 245, 309
StyI CCWWGG 1 cut(s) 296
TasI AATT 5 cut(s) 24, 201, 215, 245, 309
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 24, 201
XceI RCATGY 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.