RLG00000006964

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
12190080 .. 12192510
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006964

Sequence Viewer

Length: 528 bp
ATGCGCCGTCGTCTTCAACCTCCAATCCCAACTGACAGCGACCTCATCCCGCCAAAACACAAATGCTGCAAATCCAAACTGAAATCACGAAAATGCCACCAGGAAAAATGCAACACCAACTCTCACGATAATGGAATCTACAAGGAGTCAAATCATAGCCATGAGATTCGGACATACCCGGAATACTGGGATTCTGTGGTTTTAACCAAACAGAACCCCATCCCTCCACCAAAATCCCAGACCACCGCTGTGGTTAATCTCCTTATCACAGGTGATTATCATGGAAGTTACAGGGGGCTAAAACCTGCCAAGTATATGGCATTGACTGACACTCGGGTCATGTGTGGAGGAACAAACAACTCAGAAAGCAACTACTCTTGGAGCAGAATTTTTGTTATGGAATTAGGACCTGACTGGACAAAACATAGAAAATTGCCAGCATATACTGCTCATGTGATGCGTTCTGCAACATTTTTTATGCCTTGGTCTTGTAAAATTATAGGTGACGGATATCACGAACTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

9.39

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022517)

Species Orthologous Gene IDs
prunus_persica Prupe.1G228500_v2.0.a1
rosa_laevigata RLG00000006964
rosa_samantha Rh4BG307700 Rh4DG305300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 313
AciI CCGC 2 cut(s) 50, 246
AcsI RAATTY 1 cut(s) 387
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 1 cut(s) 99
AleI CACNNNNGTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 284, 515
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 101, 179
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 101, 179
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 191, 419
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 2 cut(s) 45, 219
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 191, 419
BseXI GCAGC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 333
BspACI CCGC 2 cut(s) 50, 246
BspCNI CTCAG 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 313
BsrI ACTGG 2 cut(s) 191, 419
BssECI CCNNGG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 45, 219
BstHHI GCGC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 99, 177
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 5
BstXI CCANNNNNNTGG 2 cut(s) 250, 316
BtsCI GGATG 2 cut(s) 45, 219
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 407
CviAII CATG 4 cut(s) 161, 281, 340, 452
CviJI RGCY 2 cut(s) 159, 298
CviKI_1 RGCY 2 cut(s) 159, 298
DdeI CTNAG 1 cut(s) 361
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 482
Eco32I GATATC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 4 cut(s) 164, 284, 343, 455
FatI CATG 4 cut(s) 160, 280, 339, 451
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 2 cut(s) 32, 206
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 164, 284, 343, 455
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 4 cut(s) 135, 146, 166, 191
HpaII CCGG 1 cut(s) 179
HphI GGTGA 2 cut(s) 284, 515
Hpy188I TCNGA 2 cut(s) 171, 364
Hpy188III TCNNGA 3 cut(s) 87, 125, 515
Hpy99I CGWCG 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 69, 111, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 4 cut(s) 164, 284, 343, 455
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 287, 503
MboII GAAGA 1 cut(s) 5
MluCI AATT 4 cut(s) 387, 401, 431, 495
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 4 cut(s) 30, 53, 234, 341
MseI TTAA 3 cut(s) 203, 255, 526
MslI CAYNNNNRTG 4 cut(s) 91, 129, 159, 248
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 101, 179
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 1 cut(s) 179
NlaIII CATG 4 cut(s) 164, 284, 343, 455
NmuCI GTSAC 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 3 cut(s) 135, 166, 191
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 407
PspPPI RGGWCCY 1 cut(s) 407
RseI CAYNNNNRTG 4 cut(s) 91, 129, 159, 248
SaqAI TTAA 3 cut(s) 203, 255, 526
SatI GCNGC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 101, 179
SetI ASST 6 cut(s) 22, 45, 274, 307, 412, 505
SfaNI GCATC 1 cut(s) 447
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 4 cut(s) 91, 129, 159, 248
Sse9I AATT 4 cut(s) 387, 401, 431, 495
SsiI CCGC 2 cut(s) 50, 246
StyD4I CCNGG 2 cut(s) 99, 177
StyI CCWWGG 1 cut(s) 482
TasI AATT 4 cut(s) 387, 401, 431, 495
TfiI GAWTC 3 cut(s) 135, 166, 191
Tru1I TTAA 3 cut(s) 203, 255, 526
Tru9I TTAA 3 cut(s) 203, 255, 526
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.