Rh4BG307700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
47715778 .. 47717306
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG307700.1

Sequence Viewer

Length: 321 bp
ATGGAGAACCCCATCCCTCCACCAAAATCCCACACCACCGCTGTGGTTAATCTCCTTATCACAGGTGATTATCATGGAAGTTACAGGGGGCTAAAACCTGCCAAGTATATGGCATTGACTGACACAAAGGTCATGTGTGGAGGAACAAACAACTCAGAAAGCAACTACTTTTGGAGCAGAATTTTTGTTATGGAATTAGGACCTGACTGGCCAAAACATAGAAAATTGCCAGCATATACTGCTCATGTGATGCGTTCTGCAACATTTTTTATGCCTTGGTCTTGTAAAATTATAGGTGACGGATATCACGAACTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

8.95

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022517)

Species Orthologous Gene IDs
prunus_persica Prupe.1G228500_v2.0.a1
rosa_laevigata RLG00000006964
rosa_samantha Rh4BG307700 Rh4DG305300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 77, 308
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 211
BccI CCATC 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 212
BshFI GGCC 1 cut(s) 211
BsnI GGCC 1 cut(s) 211
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstXI CCANNNNNNTGG 2 cut(s) 43, 109
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 3 cut(s) 74, 133, 245
CviJI RGCY 2 cut(s) 91, 211
CviKI_1 RGCY 2 cut(s) 91, 211
DdeI CTNAG 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 275
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 200
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 3 cut(s) 77, 136, 248
FatI CATG 3 cut(s) 73, 132, 244
HaeIII GGCC 1 cut(s) 211
Hin1II CATG 3 cut(s) 77, 136, 248
HphI GGTGA 2 cut(s) 77, 308
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 3 cut(s) 77, 136, 248
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 48, 70, 111, 193, 216, 243
LweI GCATC 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 80, 296
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 4 cut(s) 180, 194, 224, 288
MluNI TGGCCA 1 cut(s) 211
MnlI CCTC 2 cut(s) 27, 134
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
MseI TTAA 2 cut(s) 48, 319
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 3 cut(s) 77, 136, 248
NmuCI GTSAC 1 cut(s) 296
OliI CACNNNNGTG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 48, 319
Sau96I GGNCC 1 cut(s) 200
SetI ASST 5 cut(s) 67, 100, 132, 205, 298
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 4 cut(s) 180, 194, 224, 288
SsiI CCGC 1 cut(s) 39
StyI CCWWGG 1 cut(s) 275
TasI AATT 4 cut(s) 180, 194, 224, 288
Tru1I TTAA 2 cut(s) 48, 319
Tru9I TTAA 2 cut(s) 48, 319
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.