Prupe.1G271700_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018720
Physical Location & Seq
Reverse (-)
27854746 .. 27856083
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G271700.1

Sequence Viewer

Length: 285 bp
ATGTCAAGCAGAAGATCCTCTCGTTCTCGGCAGTCGGGTACGTCCAGGAATATCAGCGATGAACAGATCACTGATCTCGTATCCAAGTTACAGCAGCTTCTTCCTGAGATTCGCAATAGGCGCTCCGACAAGGTCTCAGCGTCCAAGGTCCTCCAGGAGACTTGCAACTATATCAGAAACTTGCACAGAGAGGTGGATGACCTAAGTGACCGGTTATCGGAGCTTTTGGCTTCAACGGACATGGACAGCGACCAAGCAGCCATTATTAGGAGCTTACTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

7.94

Isoelectric Point (pI)

89.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31600
malus_domestica MD13G1074300.v1.1 MD16G1075700.v1.1
prunus_persica Prupe.1G271700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0440111
rosa_samantha Rh4AG375200 Rh4BG387500 Rh4CG402000
rosa_wichuraiana Rw4G032100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 9
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 217, 267
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 2 cut(s) 44, 153
AluBI AGCT 3 cut(s) 97, 223, 273
AluI AGCT 3 cut(s) 97, 223, 273
Alw26I GTCTC 2 cut(s) 139, 152
AlwI GGATC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 94, 257
AsiGI ACCGGT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 106, 269
BciT130I CCWGG 2 cut(s) 46, 155
BciVI GTATCC 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 139, 152
BfoI RGCGCY 1 cut(s) 124
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 2 cut(s) 95, 258
BlsI GCNGC 2 cut(s) 96, 259
Bme1390I CCNGG 2 cut(s) 46, 155
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 46, 155
BpmI CTGGAG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 267
Bse118I RCCGGY 1 cut(s) 210
BseBI CCWGG 2 cut(s) 46, 155
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 217, 267
BseMII CTCAG 2 cut(s) 96, 150
BseXI GCAGC 2 cut(s) 106, 269
BshTI ACCGGT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 217, 267
BsmAI GTCTC 2 cut(s) 139, 152
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 14, 66, 73
BspCNI CTCAG 2 cut(s) 97, 149
BspPI GGATC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 14, 66, 73
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 46, 155
BstDEI CTNAG 3 cut(s) 105, 136, 203
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 17, 69, 76
BstMAI GTCTC 2 cut(s) 139, 152
BstMBI GATC 3 cut(s) 14, 66, 73
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 46, 155
BstSCI CCNGG 2 cut(s) 44, 153
BstV1I GCAGC 2 cut(s) 106, 269
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 39
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 1 cut(s) 241
CviJI RGCY 5 cut(s) 97, 223, 230, 260, 273
CviKI_1 RGCY 5 cut(s) 97, 223, 230, 260, 273
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 105, 136, 203
DpnI GATC 3 cut(s) 16, 68, 75
DpnII GATC 3 cut(s) 14, 66, 73
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 44, 153
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 171, 242, 281
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 95, 258
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 95, 258
GlaI GCGC 1 cut(s) 122
GluI GCNGC 2 cut(s) 95, 258
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 124
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 127, 176, 220
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 165, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 105, 136, 203
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 14, 66, 73
LmnI GCTCC 3 cut(s) 128, 220, 270
LpnPI CCDG 6 cut(s) 31, 58, 117, 140, 167, 224
Lsp1109I GCAGC 2 cut(s) 106, 269
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 87, 206
MalI GATC 3 cut(s) 16, 68, 75
MboI GATC 3 cut(s) 14, 66, 73
MboII GAAGA 2 cut(s) 24, 92
MflI RGATCY 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 28, 161, 184
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 46, 155
MvaI CCWGG 2 cut(s) 46, 155
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 3 cut(s) 14, 66, 73
NlaIII CATG 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 131
PfoI TCCNGGA 2 cut(s) 44, 153
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 2 cut(s) 96, 259
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 44, 153
PspGI CCWGG 2 cut(s) 44, 153
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 2 cut(s) 95, 258
Sau3AI GATC 3 cut(s) 14, 66, 73
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 46, 155
SetI ASST 8 cut(s) 44, 99, 135, 150, 195, 204, 225, 275
SinI GGWCC 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 44, 153
StyI CCWWGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 44
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 94, 257
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.