Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0019571

Physical Location & Seq

Genomic Coordinates Reverse (-)

29823847 .. 29824284

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCTTGAGAATTCCTCATCACCTTCTACTTTTCACCATTCTCTTCCTCTCCCTCCTCTTCTTATTCTTGTTTCATGAATACTACAACTCCACCATCAATCTTCACAAACAAATCATCATCAGCAGCAGCAGCCACACCATAAACTCCTATTCTCATCATCATCATCATCATCATCACCGTCCCTCTAATTTCATCACAAGAAAAGTGTTAGCAAGCAAATTTGACTTCACCCCATTTGTACATCATCGCCAACAACACCAAAGATCAAAATCTTCACGGGGTGATCATCACCACATGCAACCACAATCGGAGCCCTCAGCCGATGGAAACGAGATTGATCCACGTTATGGTGTTGAAAAACGACGTGTCCCCACCGGTCCAAACCCACTGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.73

Weight (kDa)

10.08

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68795
fragaria_vesca	FvH4_4g28190
prunus_persica	Prupe.1G304500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435951
rosa_rugosa	Rorug04G0290800
rosa_samantha	Rh4CG368500
rosa_wichuraiana	Rw4G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	12, 221
AdeI	CACNNNGTG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	367
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	126, 129, 132
ApoI	RAATTY	2 cut(s)	12, 221
AsiGI	ACCGGT	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	6 cut(s)	14, 28, 170, 223, 284, 296
AvaII	GGWCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	138, 141, 144
BccI	CCATC	2 cut(s)	104, 320
BclI	TGATCA	1 cut(s)	286
BisI	GCNGC	3 cut(s)	127, 130, 133
BlsI	GCNGC	3 cut(s)	128, 131, 134
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	315
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	138, 141, 144
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	168, 356
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	168, 356
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	266, 286, 340
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	377
BssMI	GATC	3 cut(s)	266, 286, 340
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	50, 65
BstAUI	TGTACA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	269, 289, 343
BstMBI	GATC	3 cut(s)	266, 286, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	138, 141, 144
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	217
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	242
CspAI	ACCGGT	1 cut(s)	377
CviAII	CATG	2 cut(s)	77, 298
CviJI	RGCY	4 cut(s)	5, 135, 316, 323
CviKI_1	RGCY	4 cut(s)	5, 135, 316, 323
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	3 cut(s)	268, 288, 342
DpnII	GATC	3 cut(s)	266, 286, 340
DraIII	CACNNNGTG	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	50, 65
EarI	CTCTTC	2 cut(s)	50, 65
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	80, 301
FaiI	YATR	4 cut(s)	78, 143, 299, 351
FaqI	GGGAC	2 cut(s)	168, 356
FatI	CATG	2 cut(s)	76, 297
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	127, 130, 133
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	127, 130, 133
GluI	GCNGC	3 cut(s)	127, 130, 133
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	2 cut(s)	80, 301
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	6 cut(s)	14, 28, 170, 223, 284, 296
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	346, 367
HpyCH4V	TGCA	2 cut(s)	301, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	2 cut(s)	346, 367
Hsp92II	CATG	2 cut(s)	80, 301
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	266, 286, 340
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	1 cut(s)	391
Lsp1109I	GCAGC	3 cut(s)	138, 141, 144
MaeII	ACGT	2 cut(s)	346, 367
MalI	GATC	3 cut(s)	268, 288, 342
MboI	GATC	3 cut(s)	266, 286, 340
MboII	GAAGA	4 cut(s)	37, 52, 95, 267
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	12, 190, 221
MnlI	CCTC	6 cut(s)	27, 59, 65, 68, 196, 328
MspI	CCGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	3 cut(s)	266, 286, 340
NlaIII	CATG	2 cut(s)	80, 301
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	301
PagI	TCATGA	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	128, 131, 134
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	380
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SatI	GCNGC	3 cut(s)	127, 130, 133
Sau3AI	GATC	3 cut(s)	266, 286, 340
Sau96I	GGNCC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	3 cut(s)	27, 349, 370
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	12, 190, 221
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	349, 370
TasI	AATT	3 cut(s)	12, 190, 221
TatI	WGTACW	1 cut(s)	241
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	3 cut(s)	126, 129, 132
TspDTI	ATGAA	3 cut(s)	65, 93, 184
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	2 cut(s)	12, 221
XceI	RCATGY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.