Rorug04G0290800

Coiled-coil domain-containing protein 130-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006850
Physical Location & Seq
Forward (+)
46506052 .. 46510758
4707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0290800.1

Sequence Viewer

Length: 1632 bp
ATGGTGATCTTCAGCCCTGTGACTGTCGGTCAGGTCTCGCTTTTGCTTGGAATTTTACCTATTATTGGAGCTTGGATTTACTCTGAGTTCTTGGAGTACAAGAAGAATTCACTCTCCACCAAACTGCACTCTGAGGTGAGTTTAGTTGAAGTTGAGAAGGATGTGGTTAAAGAGGACGACAGAGCTGTGTTGTTGGAGGGAGGAGGTCTCCAATCTGCCTCTCCCAAAGCTCGAACTTCGGCTACCGCCTCGCCGATTTTCAGGTTCATGTTGATGGATGAGGCATTTTTGATCGAAAATCGGTTGACGCTAAGAGCAATATCTGAATTTAGTGTTCTCTTAGCATACTTCTACCTGTGTGATCGTACAGATTTCTTCAACTCGTCTAAAAAGAGTTACAACCGGGATCTTTTCATATTTCTGTACTTCCTTCTCATCATAGTGTCAGCCATTACTTCTTTCACGATACATAATGAGAAGTCTCCACTCACTGGGAAATCCATACTATATTTGAATAGGCATCAAACTGAGGAGTGGAAGGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAGCAGAATTTTATAATGCAATTCGAGTGTTCATTGCTGGATATGTGTGGATGACTGGATTTGGAAACTTTTCTTATTACTATGTTCGCAAGGATTTCAGCCTAGCAAGGTTTGCACAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTTTGCTGTGTGGTCCTCAACAACAGTTACGTGCTGTACTACATCTGTCCTATGCACACTCTATTCACTCTTATGGTTTATGGGGCGCTTGGTATCTTGAACAAGTATAATGAGATTGGGTCGGTGATAGCGTTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTGGTATGGGAAATACCGGGAGTGTTTGAAGTGCTTTGGAGCCCACTTACATTCCTCGTTGCCTACACAGACCCTGCAAAACCAAATCTACCAGTCTTGCATGAGTGGCATTTCCGCTCTGGCCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTACTATCATCCTACGGTTGAGCGGTGGATGGAGAAATTGGAGGAAGCAGATTGGAAGCGTAGAATGTCAATCAAAACAGCTGTTTCTGTAGTATCCCTGACGGTGGGATATCTATGGTTTGAGTATATATACAAGATGGACAAGCTCACTTACAATAAATATCATCCTTATACCTCATGGATTCCAATAACGGTCTATATATCTTTGCGAAATGTCACCCAGCAATTCCGGAGCTACTCTTTGACCCTTTTTGCATGGCTTGGAAAGATAACACTGGAGACCTACATCTTGCAATTCCACGTGTGGTTAAGATCAGCTGTTCCTGATGGTCAGCCAAAGTTGTTGCTTGCGATGATCCCAGACTACCCAATGTTGAACTTCATGCTCACTTCTTCCATTTATGTTGCTATCTCTTACAGACTTTTTGACCTGACAAATACATTGAAAATAGCATTTGTACCCAGCAAAGATAACAAGCGCCTTGTCAACAACATAGTTACAGCCACAGCTGTTTCATGTGCATTATACTTCATCTCTTTTGTCTTCCTAAAAATCCCCCAAATGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

543

Amino Acids

63.26

Weight (kDa)

8.95

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 102 - 514 4.7e-91 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB7I CCANNNNNTGG 2 cut(s) 491, 1624
AccBSI CCGCTC 2 cut(s) 1014, 1081
AccIII TCCGGA 1 cut(s) 1287
AciI CCGC 4 cut(s) 246, 712, 1012, 1081
AclWI GGATC 2 cut(s) 414, 1408
AcsI RAATTY 4 cut(s) 51, 106, 326, 590
AcvI CACGTG 1 cut(s) 1360
AfaI GTAC 6 cut(s) 98, 367, 425, 569, 770, 1518
AfiI CCNNNNNNNGG 4 cut(s) 65, 491, 1162, 1624
AflIII ACRYGT 1 cut(s) 1359
AgsI TTSAA 7 cut(s) 149, 379, 514, 832, 926, 1435, 1504
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 8 cut(s) 71, 185, 230, 1139, 1204, 1293, 1376, 1568
AluI AGCT 8 cut(s) 71, 185, 230, 1139, 1204, 1293, 1376, 1568
Alw26I GTCTC 4 cut(s) 40, 212, 486, 1331
AlwI GGATC 2 cut(s) 414, 1408
AlwNI CAGNNNCTG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 1287
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 2 cut(s) 581, 584
ApoI RAATTY 4 cut(s) 51, 106, 326, 590
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 2 cut(s) 820, 1539
AspS9I GGNCC 1 cut(s) 745
AsuC2I CCSGG 2 cut(s) 404, 915
AsuHPI GGTGA 4 cut(s) 16, 148, 868, 1267
AvaII GGWCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 941
BbrPI CACGTG 1 cut(s) 1360
BbsI GAAGAC 1 cut(s) 1594
BbvI GCAGC 2 cut(s) 568, 596
BccI CCATC 4 cut(s) 268, 1081, 1189, 1379
BciVI GTATCC 1 cut(s) 1162
BcnI CCSGG 2 cut(s) 404, 915
BcoDI GTCTC 4 cut(s) 40, 212, 486, 1331
BfaI CTAG 1 cut(s) 686
BfmI CTRYAG 2 cut(s) 582, 1146
BfoI RGCGCY 2 cut(s) 821, 1540
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 1162
BisI GCNGC 3 cut(s) 582, 585, 713
BlsI GCNGC 3 cut(s) 583, 586, 714
Bme1390I CCNGG 2 cut(s) 404, 915
Bme18I GGWCC 1 cut(s) 745
BmeRI GACNNNNNGTC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 938
BmrFI CCNGG 2 cut(s) 404, 915
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 529, 537
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 1594
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 1 cut(s) 1355
BpuMI CCSGG 2 cut(s) 404, 915
BsaAI YACGTR 2 cut(s) 763, 1360
BsaI GGTCTC 3 cut(s) 40, 212, 1331
BsaWI WCCGGW 1 cut(s) 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 491, 1162, 1624
Bse1I ACTGG 4 cut(s) 496, 643, 989, 1338
Bse3DI GCAATG 2 cut(s) 615, 873
BseAI TCCGGA 1 cut(s) 1287
BseGI GGATG 7 cut(s) 166, 283, 552, 639, 1066, 1092, 1222
BseLI CCNNNNNNNGG 4 cut(s) 65, 491, 1162, 1624
BseMI GCAATG 2 cut(s) 615, 873
BseMII CTCAG 3 cut(s) 75, 123, 519
BseNI ACTGG 4 cut(s) 496, 643, 989, 1338
BseRI GAGGAG 2 cut(s) 216, 545
BseXI GCAGC 2 cut(s) 568, 596
BseYI CCCAGC 2 cut(s) 1278, 1520
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 1020
BsiSI CCGG 3 cut(s) 403, 914, 1288
BslI CCNNNNNNNGG 4 cut(s) 65, 491, 1162, 1624
BsmAI GTCTC 4 cut(s) 40, 212, 486, 1331
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 3 cut(s) 40, 212, 1331
Bsp1286I GDGCHC 1 cut(s) 941
Bsp13I TCCGGA 1 cut(s) 1287
Bsp143I GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
BspACI CCGC 4 cut(s) 246, 712, 1012, 1081
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 3 cut(s) 76, 124, 520
BspEI TCCGGA 1 cut(s) 1287
BspLI GGNNCC 1 cut(s) 938
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 2 cut(s) 414, 1408
BspTNI GGTCTC 3 cut(s) 40, 212, 1331
BsrBI CCGCTC 2 cut(s) 1014, 1081
BsrDI GCAATG 2 cut(s) 615, 873
BsrI ACTGG 4 cut(s) 496, 643, 989, 1338
BssMI GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
Bst4CI ACNGT 5 cut(s) 25, 758, 1075, 1162, 1252
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBAI YACGTR 2 cut(s) 763, 1360
BstC8I GCNNGC 2 cut(s) 880, 1407
BstDEI CTNAG 5 cut(s) 84, 132, 311, 340, 528
BstF5I GGATG 7 cut(s) 166, 283, 552, 639, 1066, 1092, 1222
BstH2I RGCGCY 2 cut(s) 821, 1540
BstHHI GCGC 2 cut(s) 820, 1539
BstKTI GATC 7 cut(s) 9, 294, 364, 409, 1027, 1373, 1416
BstMAI GTCTC 4 cut(s) 40, 212, 486, 1331
BstMBI GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
BstMWI GCNNNNNNNGC 2 cut(s) 695, 1003
BstSCI CCNGG 2 cut(s) 402, 913
BstSFI CTRYAG 2 cut(s) 582, 1146
BstV1I GCAGC 2 cut(s) 568, 596
BstV2I GAAGAC 1 cut(s) 1594
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 1 cut(s) 1020
BtgZI GCGATG 1 cut(s) 1424
BtsCI GGATG 7 cut(s) 166, 283, 552, 639, 1066, 1092, 1222
BtsIMutI CAGTG 2 cut(s) 489, 1331
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 2 cut(s) 880, 1407
CaiI CAGNNNCTG 1 cut(s) 971
CfoI GCGC 2 cut(s) 820, 1539
Cfr13I GGNCC 1 cut(s) 745
CseI GACGC 1 cut(s) 316
Csp6I GTAC 6 cut(s) 97, 366, 424, 568, 769, 1517
CviAII CATG 6 cut(s) 268, 998, 1236, 1314, 1441, 1575
CviQI GTAC 6 cut(s) 97, 366, 424, 568, 769, 1517
DdeI CTNAG 5 cut(s) 84, 132, 311, 340, 528
DpnI GATC 7 cut(s) 8, 293, 363, 408, 1026, 1372, 1415
DpnII GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
DriI GACNNNNNGTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 941
Eco31I GGTCTC 3 cut(s) 40, 212, 1331
Eco32I GATATC 1 cut(s) 1169
Eco47I GGWCC 1 cut(s) 745
Eco72I CACGTG 1 cut(s) 1360
EcoRI GAATTC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 1169
EcoT38I GRGCYC 1 cut(s) 941
FaeI CATG 6 cut(s) 271, 1001, 1239, 1317, 1444, 1578
FatI CATG 6 cut(s) 267, 997, 1235, 1313, 1440, 1574
FauNDI CATATG 1 cut(s) 1034
Fnu4HI GCNGC 3 cut(s) 582, 585, 713
FokI GGATG 7 cut(s) 173, 290, 559, 646, 1053, 1099, 1209
FriOI GRGCYC 1 cut(s) 941
Fsp4HI GCNGC 3 cut(s) 582, 585, 713
FspBI CTAG 1 cut(s) 686
GlaI GCGC 2 cut(s) 819, 1538
GluI GCNGC 3 cut(s) 582, 585, 713
GsaI CCCAGC 2 cut(s) 1282, 1524
GsuI CTGGAG 1 cut(s) 1355
HaeII RGCGCY 2 cut(s) 821, 1540
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 3 cut(s) 403, 914, 1288
HgaI GACGC 1 cut(s) 316
HhaI GCGC 2 cut(s) 820, 1539
Hin1II CATG 6 cut(s) 271, 1001, 1239, 1317, 1444, 1578
Hin6I GCGC 2 cut(s) 818, 1537
HinP1I GCGC 2 cut(s) 818, 1537
HincII GTYRAC 2 cut(s) 306, 1546
HindII GTYRAC 2 cut(s) 306, 1546
HinfI GANTC 1 cut(s) 1240
HpaII CCGG 3 cut(s) 403, 914, 1288
HphI GGTGA 4 cut(s) 16, 148, 868, 1267
Hpy166II GTNNAC 2 cut(s) 306, 1546
Hpy188I TCNGA 3 cut(s) 85, 133, 325
Hpy188III TCNNGA 4 cut(s) 463, 829, 1288, 1382
Hpy8I GTNNAC 2 cut(s) 306, 1546
HpyAV CCTTC 3 cut(s) 151, 440, 532
HpyCH4III ACNGT 5 cut(s) 25, 758, 1075, 1162, 1252
HpyCH4IV ACGT 2 cut(s) 762, 1359
HpyF10VI GCNNNNNNNGC 2 cut(s) 695, 1003
HpyF3I CTNAG 5 cut(s) 84, 132, 311, 340, 528
HpySE526I ACGT 2 cut(s) 762, 1359
Hsp92II CATG 6 cut(s) 271, 1001, 1239, 1317, 1444, 1578
HspAI GCGC 2 cut(s) 818, 1537
Kpn2I TCCGGA 1 cut(s) 1287
Kzo9I GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
LmnI GCTCC 3 cut(s) 68, 936, 1290
Lsp1109I GCAGC 2 cut(s) 568, 596
LweI GCATC 2 cut(s) 529, 537
MaeI CTAG 1 cut(s) 686
MaeII ACGT 2 cut(s) 762, 1359
MaeIII GTNAC 6 cut(s) 19, 395, 758, 1028, 1273, 1555
MalI GATC 7 cut(s) 8, 293, 363, 408, 1026, 1372, 1415
MbiI CCGCTC 2 cut(s) 1014, 1081
MboI GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
MboII GAAGA 4 cut(s) 115, 367, 1443, 1594
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 941
MmeI TCCRAC 1 cut(s) 174
MroI TCCGGA 1 cut(s) 1287
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 4 cut(s) 168, 717, 866, 1367
MslI CAYNNNNRTG 3 cut(s) 272, 440, 803
MspA1I CMGCKG 3 cut(s) 1139, 1376, 1568
MspI CCGG 3 cut(s) 403, 914, 1288
MspR9I CCNGG 2 cut(s) 404, 915
MwoI GCNNNNNNNGC 2 cut(s) 695, 1003
NciI CCSGG 2 cut(s) 404, 915
NdeI CATATG 1 cut(s) 1034
NdeII GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
NlaIII CATG 6 cut(s) 271, 1001, 1239, 1317, 1444, 1578
NlaIV GGNNCC 1 cut(s) 938
NmuCI GTSAC 2 cut(s) 19, 1273
PaqCI CACCTGC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 1240
PflMI CCANNNNNTGG 2 cut(s) 491, 1624
PkrI GCNGC 3 cut(s) 583, 586, 714
PmaCI CACGTG 1 cut(s) 1360
PmlI CACGTG 1 cut(s) 1360
Ppu21I YACGTR 2 cut(s) 763, 1360
PsiI TTATAA 1 cut(s) 597
PspCI CACGTG 1 cut(s) 1360
PspFI CCCAGC 2 cut(s) 1278, 1520
PspN4I GGNNCC 1 cut(s) 938
PspPI GGNCC 1 cut(s) 745
PsrI GAACNNNNNNTAC 2 cut(s) 226, 258
PstI CTGCAG 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 3 cut(s) 1139, 1376, 1568
RsaI GTAC 6 cut(s) 98, 367, 425, 569, 770, 1518
RsaNI GTAC 6 cut(s) 97, 366, 424, 568, 769, 1517
RseI CAYNNNNRTG 3 cut(s) 272, 440, 803
SaqAI TTAA 4 cut(s) 168, 717, 866, 1367
SatI GCNGC 3 cut(s) 582, 585, 713
Sau3AI GATC 7 cut(s) 6, 291, 361, 406, 1024, 1370, 1413
Sau96I GGNCC 1 cut(s) 745
ScrFI CCNGG 2 cut(s) 404, 915
SduI GDGCHC 1 cut(s) 941
SfaNI GCATC 2 cut(s) 529, 537
SfcI CTRYAG 2 cut(s) 582, 1146
SinI GGWCC 1 cut(s) 745
SmiMI CAYNNNNRTG 3 cut(s) 272, 440, 803
SsiI CCGC 4 cut(s) 246, 712, 1012, 1081
SspMI CTAG 1 cut(s) 686
StyD4I CCNGG 2 cut(s) 402, 913
TaaI ACNGT 5 cut(s) 25, 758, 1075, 1162, 1252
TaiI ACGT 2 cut(s) 765, 1362
TaqI TCGA 3 cut(s) 232, 294, 607
TaqII GACCGA 1 cut(s) 17
TatI WGTACW 3 cut(s) 96, 423, 768
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 1 cut(s) 1240
Tru1I TTAA 4 cut(s) 168, 717, 866, 1367
Tru9I TTAA 4 cut(s) 168, 717, 866, 1367
TscAI CASTG 2 cut(s) 496, 1338
TseFI GTSAC 2 cut(s) 19, 1273
TseI GCWGC 2 cut(s) 581, 584
Tsp45I GTSAC 2 cut(s) 19, 1273
TspDTI ATGAA 6 cut(s) 256, 403, 604, 1429, 1563, 1579
TspRI CASTG 2 cut(s) 496, 1338
Van91I CCANNNNNTGG 2 cut(s) 491, 1624
VpaK11BI GGWCC 1 cut(s) 745
XapI RAATTY 4 cut(s) 51, 106, 326, 590
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.