Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Forward (+)

29829856 .. 29832971

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G304600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCCTCACTTGCAGCTGCTAGGGCAGACAACTTTTATTATCCACCAGAATGGACGCCAAAGAAGGGTTCTTTGAACAAGTTCCATGGTCAACATGCTTTGAGGGAGAGAGCAAGGAAATTGGACCAGGGGATTTTGATTATAAGGTTTGAGATGCCTTACCATATATGGTGTGGTGGGTGCAATTCTATGATTGCAAAGGGTGTTCGTTTTAATGCAGAAAAAAAGCAAGTCGGAAATTACTATTCTACAAAGATATGGAGCTTTACCATGAAGTCAGCCTGCTGCAAACATGAGATTGTTATTCAGACAGATCCGCAGAATTGCCAGTATGTGATTATTAGTGGGGCCACTCAAAAGGTTGAGGAATATGACATTGTGGATGCAGAAACTGTTGCACTTCCTGGAGATGAAGAAAGAGGAAAGCTCGCGGATCCATTTTATCGTCTTGAACACCAAGAAGAGGATTTGCAAAAGAAGAAAGAAGCTGAGCCAGTATTAGTGCGCCTACAGCGAGTTTCTGATGAAAGGCATTTAGATGACTATGCCCTCAACAAGGCCCTCAGAGCAAAACTTAGGTCTCAAAAGAAAAGAGTTGCTGAAGAAGAGGCTGCTTCAAGGAAGATGGGTCTTGGTATACGACTGCTTCCAGTGGCAGAGGAGGATGTTACTGCGGCATCACATGTGAAGTTCGCTTCCAGGTTTGACAAAAGCAGGAAGGATAAGCGAGCTTTGATCAATGCTGCTTCAATTTTTCCTGGGTCGTCTGGGACTTCTACGTCCAGTAAGAAGAGTTTGGAACTACAATCTAAGAGAAGGAAAATAAGTGCTGCTGCTGCATCCAACTTACTTACAGGGGGATTCAAGCCATCATCATGGTCTCAGAATGCAGTTTCTTCAGGCAGACACAATGGAACGTTAGTGACAGTGAGACGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

314

Amino Acids

35.1

Weight (kDa)

9.65

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AasI	GACNNNNNNGTC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	637
AccII	CGCG	1 cut(s)	431
AciI	CCGC	3 cut(s)	317, 431, 674
AclI	AACGTT	1 cut(s)	917
AclWI	GGATC	3 cut(s)	308, 428, 441
AcuI	CTGAAG	2 cut(s)	621, 882
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	65, 463, 556
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	5 cut(s)	76, 452, 618, 750, 865
AjnI	CCWGG	4 cut(s)	126, 403, 698, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	5 cut(s)	17, 264, 427, 488, 731
AluI	AGCT	5 cut(s)	17, 264, 427, 488, 731
Alw26I	GTCTC	3 cut(s)	585, 885, 925
AlwI	GGATC	3 cut(s)	308, 428, 441
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	348, 558
ApeKI	GCWGC	8 cut(s)	14, 17, 285, 611, 743, 830, 833, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	124, 348, 559
AvaII	GGWCC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	8 cut(s)	4, 26, 272, 598, 730, 817, 820, 823
BccI	CCATC	2 cut(s)	619, 877
BciT130I	CCWGG	4 cut(s)	128, 405, 700, 759
BclI	TGATCA	1 cut(s)	735
BcoDI	GTCTC	3 cut(s)	585, 885, 925
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	509
BisI	GCNGC	9 cut(s)	15, 18, 286, 612, 675, 744, 831, 834, 837
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	9 cut(s)	16, 19, 287, 613, 676, 745, 832, 835, 838
Bme1390I	CCNGG	4 cut(s)	128, 405, 700, 759
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	124, 348, 559
BmiI	GGNNCC	2 cut(s)	349, 435
BmrFI	CCNGG	4 cut(s)	128, 405, 700, 759
BmsI	GCATC	4 cut(s)	144, 373, 686, 848
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	585, 885
BsaJI	CCNNGG	3 cut(s)	85, 127, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 463, 556
Bse1I	ACTGG	4 cut(s)	328, 494, 650, 783
BseBI	CCWGG	4 cut(s)	128, 405, 700, 759
BseDI	CCNNGG	3 cut(s)	85, 127, 758
BseGI	GGATG	3 cut(s)	388, 670, 839
BseLI	CCNNNNNNNGG	3 cut(s)	65, 463, 556
BseMII	CTCAG	3 cut(s)	480, 577, 896
BseNI	ACTGG	4 cut(s)	328, 494, 650, 783
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	8 cut(s)	4, 26, 272, 598, 730, 817, 820, 823
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	350, 560
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	65, 463, 556
BsmAI	GTCTC	3 cut(s)	585, 885, 925
BsmBI	CGTCTC	1 cut(s)	925
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	2 cut(s)	350, 560
Bso31I	GGTCTC	2 cut(s)	585, 885
Bsp143I	GATC	3 cut(s)	313, 433, 735
Bsp1720I	GCTNAGC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	3 cut(s)	317, 431, 674
BspANI	GGCC	2 cut(s)	350, 560
BspCNI	CTCAG	3 cut(s)	481, 576, 895
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	349, 435
BspPI	GGATC	3 cut(s)	308, 428, 441
BspTNI	GGTCTC	2 cut(s)	585, 885
BsrI	ACTGG	4 cut(s)	328, 494, 650, 783
BssECI	CCNNGG	3 cut(s)	85, 127, 758
BssMI	GATC	3 cut(s)	313, 433, 735
BssNAI	GTATAC	1 cut(s)	638
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	85
Bst1107I	GTATAC	1 cut(s)	638
Bst2UI	CCWGG	4 cut(s)	128, 405, 700, 759
Bst4CI	ACNGT	2 cut(s)	394, 928
Bst6I	CTCTTC	3 cut(s)	456, 600, 785
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	283, 429, 729
BstDEI	CTNAG	6 cut(s)	489, 563, 575, 810, 882, 939
BstDSI	CCRYGG	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	3 cut(s)	388, 670, 839
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	316, 436, 738
BstMAI	GTCTC	3 cut(s)	585, 885, 925
BstMBI	GATC	3 cut(s)	313, 433, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 511, 566, 836
BstNI	CCWGG	4 cut(s)	128, 405, 700, 759
BstNSI	RCATGY	2 cut(s)	98, 686
BstSCI	CCNGG	4 cut(s)	126, 403, 698, 757
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	8 cut(s)	4, 26, 272, 598, 730, 817, 820, 823
BstX2I	RGATCY	2 cut(s)	313, 433
BstXI	CCANNNNNNTGG	2 cut(s)	51, 876
BstYI	RGATCY	2 cut(s)	313, 433
BstZ17I	GTATAC	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	350, 560
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	388, 670, 839
BtsIMutI	CAGTG	2 cut(s)	657, 933
Cac8I	GCNNGC	3 cut(s)	283, 429, 729
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	3 cut(s)	124, 348, 559
CseI	GACGC	1 cut(s)	64
CviAII	CATG	6 cut(s)	86, 95, 271, 293, 683, 876
DdeI	CTNAG	6 cut(s)	489, 563, 575, 810, 882, 939
DpnI	GATC	3 cut(s)	315, 435, 737
DpnII	GATC	3 cut(s)	313, 433, 735
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	456, 600, 785
EarI	CTCTTC	3 cut(s)	456, 600, 785
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	2 cut(s)	585, 885
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	621, 882
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	4 cut(s)	126, 403, 698, 757
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	925
FaeI	CATG	6 cut(s)	89, 98, 274, 296, 686, 879
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	6 cut(s)	85, 94, 270, 292, 682, 875
FbaI	TGATCA	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	9 cut(s)	15, 18, 286, 612, 675, 744, 831, 834, 837
FokI	GGATG	3 cut(s)	395, 677, 826
Fsp4HI	GCNGC	9 cut(s)	15, 18, 286, 612, 675, 744, 831, 834, 837
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	9 cut(s)	15, 18, 286, 612, 675, 744, 831, 834, 837
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	350, 560
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	89, 98, 274, 296, 686, 879
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	861
Hpy166II	GTNNAC	2 cut(s)	92, 638
Hpy188I	TCNGA	5 cut(s)	236, 309, 523, 566, 885
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	92, 638
HpyAV	CCTTC	3 cut(s)	58, 712, 810
HpyCH4III	ACNGT	2 cut(s)	394, 928
HpyCH4IV	ACGT	2 cut(s)	779, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 511, 566, 836
HpyF3I	CTNAG	6 cut(s)	489, 563, 575, 810, 882, 939
HpySE526I	ACGT	2 cut(s)	779, 917
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	89, 98, 274, 296, 686, 879
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	313, 433, 735
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	8 cut(s)	4, 26, 272, 598, 730, 817, 820, 823
LweI	GCATC	4 cut(s)	144, 373, 686, 848
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	779, 917
MaeIII	GTNAC	2 cut(s)	667, 922
MalI	GATC	3 cut(s)	315, 435, 737
MboI	GATC	3 cut(s)	313, 433, 735
MboII	GAAGA	8 cut(s)	425, 473, 490, 614, 617, 634, 802, 888
MflI	RGATCY	2 cut(s)	313, 433
MluCI	AATT	5 cut(s)	119, 184, 238, 322, 750
MmeI	TCCRAC	2 cut(s)	214, 867
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	3 cut(s)	49, 537, 874
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	4 cut(s)	128, 405, 700, 759
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	4 cut(s)	128, 405, 700, 759
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	23, 511, 566, 836
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	313, 433, 735
NlaIII	CATG	6 cut(s)	89, 98, 274, 296, 686, 879
NlaIV	GGNNCC	2 cut(s)	349, 435
NmuCI	GTSAC	1 cut(s)	922
NspI	RCATGY	2 cut(s)	98, 686
PciI	ACATGT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	9 cut(s)	16, 19, 287, 613, 676, 745, 832, 835, 838
PscI	ACATGT	1 cut(s)	682
PsiI	TTATAA	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	917
Psp6I	CCWGG	4 cut(s)	126, 403, 698, 757
PspGI	CCWGG	4 cut(s)	126, 403, 698, 757
PspN4I	GGNNCC	2 cut(s)	349, 435
PspPI	GGNCC	3 cut(s)	124, 348, 559
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	313, 433
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	3 cut(s)	49, 537, 874
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	9 cut(s)	15, 18, 286, 612, 675, 744, 831, 834, 837
Sau3AI	GATC	3 cut(s)	313, 433, 735
Sau96I	GGNCC	3 cut(s)	124, 348, 559
ScrFI	CCNGG	4 cut(s)	128, 405, 700, 759
SfaNI	GCATC	4 cut(s)	144, 373, 686, 848
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	3 cut(s)	49, 537, 874
Sse9I	AATT	5 cut(s)	119, 184, 238, 322, 750
SsiI	CCGC	3 cut(s)	317, 431, 674
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	4 cut(s)	126, 403, 698, 757
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	394, 928
TaiI	ACGT	2 cut(s)	782, 920
TasI	AATT	5 cut(s)	119, 184, 238, 322, 750
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	1 cut(s)	861
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	657, 933
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	8 cut(s)	14, 17, 285, 611, 743, 830, 833, 836
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	3 cut(s)	287, 426, 540
TspRI	CASTG	2 cut(s)	657, 933
VpaK11BI	GGWCC	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	554
XceI	RCATGY	2 cut(s)	98, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.