Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

62331406 .. 62334513

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG368400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCTTCACTTGCAGCTGCTAGAGCCGACAACTTCTATTATCCTCCGGAATGGACCCCGAATCAGGGTTCTTTGAACAAGTTTCATGGTCAGCATGCTCTGAGGGAGCGAGCGCGGAAACTGGATCAGGGAATTTTGATCATAAGGTTTGAGATGCCTTACAATATATGGTGCGGTGGGTGCAATTCTATGATTGCAAAGGGTGTTCGGTTCAATGCTGAAAAAAAGCAAGTGGGAAACTATTATTCAACAAAGATATGGAGCTTTTCCATGAAGGCTGCATGCTGCAAACAGGAGATTGTTATTCAGACAGATCCGAAGAATTGTCAGTATGTGATTATTAGCGGGGCTCAACAAAAGACTGAGGATTTTGACATTGAGGATGCAGAAACCTTTGCACTTCCTGCAGAAGAAGAAAAAGGTATGCTCGCAGATCCGTTTTACCGTCTTGAACATCAAGAAGAGGATTTGCAAAAGAAGAAAGAAGCTGAGCCAGTGCTCGTCCGCTTGCAGAGAATTTCTGACGACAGGCATTCAGATGATTATGCCCTTAACAAGGCTCTCAGGGCCAAACTTAGATCTCAAAAGAAAAGAGTTGCTGAAGAAGAGGCTGCTTCAAGGAGAATGGGCCTCCATATACGACTGCTTCCAGCGGCAGAAGAGGATACTGCCACTGCATCACGGATGAAATTCTCTTCCAAGTTTGACAGAAATAGGAAGGATAAGCGAGCTTTGATTAATGCTTCTTCAATCTTTCCTGGGTCATCTGGGACTTCTAAGAAAGCCTTGGAACTTGAATCTAAGAGAAGGAAAATAAGTGCTGCAGCAGCATCTAGCTTACTTGCTGGGCGAGTCAAGCCTTCATCGTGGTCTCAGGATTCTGTTTCTTCAAGCAGGCACAATGGCTCTGCAGTCAAAGTGAGACGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

310

Amino Acids

35.06

Weight (kDa)

9.58

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saf4_Yju2	PF04502	13 - 289	3.4e-62	Saf4/Yju2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	5 cut(s)	115, 174, 345, 505, 653
AclWI	GGATC	3 cut(s)	132, 308, 428
AcsI	RAATTY	3 cut(s)	132, 516, 689
AcuI	CTGAAG	1 cut(s)	621
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 556
AgsI	TTSAA	8 cut(s)	76, 214, 249, 452, 618, 750, 797, 891
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	5 cut(s)	17, 264, 488, 731, 837
AluI	AGCT	5 cut(s)	17, 264, 488, 731, 837
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	2 cut(s)	876, 916
AlwI	GGATC	3 cut(s)	132, 308, 428
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	567, 628
ApeKI	GCWGC	8 cut(s)	14, 17, 278, 285, 611, 821, 824, 827
ApoI	RAATTY	3 cut(s)	132, 516, 689
AseI	ATTAAT	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	54, 567, 628
AvaII	GGWCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	8 cut(s)	4, 26, 265, 272, 598, 808, 836, 839
BciT130I	CCWGG	1 cut(s)	759
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	876, 916
BfaI	CTAG	3 cut(s)	21, 834, 931
BfmI	CTRYAG	3 cut(s)	405, 822, 909
BfuI	GTATCC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	9 cut(s)	15, 18, 279, 286, 612, 654, 822, 825, 828
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	9 cut(s)	16, 19, 280, 287, 613, 655, 823, 826, 829
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	54, 567, 628
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	4 cut(s)	144, 373, 686, 839
Bpu1102I	GCTNAGC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	758, 786
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 556
Bse1I	ACTGG	2 cut(s)	126, 494
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	758, 786
BseGI	GGATG	2 cut(s)	388, 690
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 556
BseMII	CTCAG	5 cut(s)	92, 354, 480, 577, 887
BseNI	ACTGG	2 cut(s)	126, 494
BseXI	GCAGC	8 cut(s)	4, 26, 265, 272, 598, 808, 836, 839
BseYI	CCCAGC	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	569, 630
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 556
BsmAI	GTCTC	2 cut(s)	876, 916
BsmBI	CGTCTC	1 cut(s)	916
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	569, 630
Bso31I	GGTCTC	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	352, 501
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	124, 138, 313, 433, 578
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	5 cut(s)	115, 174, 345, 505, 653
BspANI	GGCC	2 cut(s)	569, 630
BspCNI	CTCAG	5 cut(s)	93, 355, 481, 576, 886
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	3 cut(s)	409, 826, 913
BspPI	GGATC	3 cut(s)	132, 308, 428
BspTNI	GGTCTC	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	126, 494
BssECI	CCNNGG	2 cut(s)	758, 786
BssMI	GATC	5 cut(s)	124, 138, 313, 433, 578
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	4 cut(s)	456, 600, 654, 700
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	7 cut(s)	96, 111, 283, 429, 509, 729, 896
BstDEI	CTNAG	8 cut(s)	101, 363, 489, 563, 575, 777, 801, 873
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	388, 690
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	127, 141, 316, 436, 581
BstMAI	GTCTC	2 cut(s)	876, 916
BstMBI	GATC	5 cut(s)	124, 138, 313, 433, 578
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 180, 404, 566, 827, 856
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	2 cut(s)	98, 285
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	3 cut(s)	405, 822, 909
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	8 cut(s)	4, 26, 265, 272, 598, 808, 836, 839
BstX2I	RGATCY	3 cut(s)	313, 433, 578
BstYI	RGATCY	3 cut(s)	313, 433, 578
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	569, 630
BtsCI	GGATG	2 cut(s)	388, 690
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	501, 672
Cac8I	GCNNGC	7 cut(s)	96, 111, 283, 429, 509, 729, 896
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	54, 567, 628
CviAII	CATG	4 cut(s)	86, 95, 271, 282
DdeI	CTNAG	8 cut(s)	101, 363, 489, 563, 575, 777, 801, 873
DpnI	GATC	5 cut(s)	126, 140, 315, 435, 580
DpnII	GATC	5 cut(s)	124, 138, 313, 433, 578
Eam1104I	CTCTTC	4 cut(s)	456, 600, 654, 700
EarI	CTCTTC	4 cut(s)	456, 600, 654, 700
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	916
FaeI	CATG	4 cut(s)	89, 98, 274, 285
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	4 cut(s)	85, 94, 270, 281
FauI	CCCGC	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	9 cut(s)	15, 18, 279, 286, 612, 654, 822, 825, 828
FokI	GGATG	2 cut(s)	395, 697
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	9 cut(s)	15, 18, 279, 286, 612, 654, 822, 825, 828
FspBI	CTAG	3 cut(s)	21, 834, 931
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	9 cut(s)	15, 18, 279, 286, 612, 654, 822, 825, 828
GsaI	CCCAGC	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	569, 630
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	89, 98, 274, 285
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	4 cut(s)	61, 797, 852, 878
HpaII	CCGG	1 cut(s)	47
Hpy188I	TCNGA	5 cut(s)	102, 309, 318, 523, 538
Hpy188III	TCNNGA	4 cut(s)	47, 449, 458, 875
HpyAV	CCTTC	4 cut(s)	268, 712, 801, 870
HpyCH4III	ACNGT	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 180, 404, 566, 827, 856
HpyF3I	CTNAG	8 cut(s)	101, 363, 489, 563, 575, 777, 801, 873
Hsp92II	CATG	4 cut(s)	89, 98, 274, 285
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	124, 138, 313, 433, 578
LmnI	GCTCC	2 cut(s)	106, 261
Lsp1109I	GCAGC	8 cut(s)	4, 26, 265, 272, 598, 808, 836, 839
LweI	GCATC	4 cut(s)	144, 373, 686, 839
MaeI	CTAG	3 cut(s)	21, 834, 931
MalI	GATC	5 cut(s)	126, 140, 315, 435, 580
MboI	GATC	5 cut(s)	124, 138, 313, 433, 578
MflI	RGATCY	3 cut(s)	313, 433, 578
MhlI	GDGCHC	2 cut(s)	352, 501
MluCI	AATT	5 cut(s)	132, 184, 322, 516, 689
MlyI	GAGTC	1 cut(s)	861
MnlI	CCTC	8 cut(s)	54, 96, 358, 373, 457, 601, 641, 655
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	2 cut(s)	552, 738
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	17, 653
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	6 cut(s)	23, 180, 404, 566, 827, 856
NdeII	GATC	5 cut(s)	124, 138, 313, 433, 578
NlaIII	CATG	4 cut(s)	89, 98, 274, 285
NlaIV	GGNNCC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	98, 285
PaeI	GCATGC	2 cut(s)	98, 285
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	61, 797, 878
PkrI	GCNGC	9 cut(s)	16, 19, 280, 287, 613, 655, 823, 826, 829
PleI	GAGTC	1 cut(s)	860
PpsI	GAGTC	1 cut(s)	860
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	3 cut(s)	54, 567, 628
PstI	CTGCAG	3 cut(s)	409, 826, 913
PsuI	RGATCY	3 cut(s)	313, 433, 578
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	552, 738
SatI	GCNGC	9 cut(s)	15, 18, 279, 286, 612, 654, 822, 825, 828
Sau3AI	GATC	5 cut(s)	124, 138, 313, 433, 578
Sau96I	GGNCC	3 cut(s)	54, 567, 628
SchI	GAGTC	1 cut(s)	861
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	2 cut(s)	352, 501
SetI	ASST	8 cut(s)	19, 149, 266, 395, 424, 490, 733, 839
SfaNI	GCATC	4 cut(s)	144, 373, 686, 839
SfcI	CTRYAG	3 cut(s)	405, 822, 909
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	2 cut(s)	98, 285
Sse9I	AATT	5 cut(s)	132, 184, 322, 516, 689
SsiI	CCGC	5 cut(s)	115, 174, 345, 505, 653
SspMI	CTAG	3 cut(s)	21, 834, 931
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	446
TasI	AATT	5 cut(s)	132, 184, 322, 516, 689
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	3 cut(s)	61, 797, 878
Tru1I	TTAA	2 cut(s)	552, 738
Tru9I	TTAA	2 cut(s)	552, 738
TscAI	CASTG	2 cut(s)	501, 679
TseI	GCWGC	8 cut(s)	14, 17, 278, 285, 611, 821, 824, 827
TspDTI	ATGAA	4 cut(s)	74, 287, 701, 852
TspGWI	ACGGA	2 cut(s)	426, 697
TspRI	CASTG	2 cut(s)	501, 679
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	738
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	3 cut(s)	132, 516, 689
XceI	RCATGY	2 cut(s)	98, 285
XspI	CTAG	3 cut(s)	21, 834, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.