Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406275.1

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

13 .. 729

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgccttacaatatatggtgcggtgggtgcaattctatgattgcaaagggtgttcggttcaatgctgaaaaaaagcaagtgggaaactattattcaacaaagatatggagcttttccatgaaggctgcatgctgcaaacaggagattgttattcagacagatccgaagaattgtcagtatgtgattattagcggggctcaacaaaagactgaggattttgacattgaggatgcagaaacctttgcacttcctgcagaagaagaaaaaggtatgctcgcagatccgttttaccgtcttgaacatcaagaagaggatttgcaaaagaagaaagaagctgagccagtgctcgtccgcttgcagagaatttctgacgacaggcattcagatgattatgcccttaacaaggctctcagggccaaacttagagtatgtcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

145

Amino Acids

16.71

Weight (kDa)

5.95

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 192, 352
AclWI	GGATC	2 cut(s)	155, 275
AcsI	RAATTY	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	61, 96, 299
AluBI	AGCT	2 cut(s)	111, 335
AluI	AGCT	2 cut(s)	111, 335
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	155, 275
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	125, 132
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	112, 119
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	126, 133
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	127, 134
BmgT120I	GGNCC	1 cut(s)	414
BmsI	GCATC	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	201, 327, 424
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	112, 119
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	199, 348
Bsp143I	GATC	2 cut(s)	160, 280
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	21, 192, 352
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	202, 328, 423
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	155, 275
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	160, 280
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	130, 276, 356
BstDEI	CTNAG	4 cut(s)	210, 336, 410, 422
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	2 cut(s)	163, 283
BstMBI	GATC	2 cut(s)	160, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 251, 413
BstNSI	RCATGY	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	112, 119
BstX2I	RGATCY	2 cut(s)	160, 280
BstYI	RGATCY	2 cut(s)	160, 280
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	348, 433
Cac8I	GCNNGC	3 cut(s)	130, 276, 356
Cfr13I	GGNCC	1 cut(s)	414
CviAII	CATG	2 cut(s)	118, 129
CviJI	RGCY	7 cut(s)	111, 125, 197, 335, 340, 407, 416
CviKI_1	RGCY	7 cut(s)	111, 125, 197, 335, 340, 407, 416
DdeI	CTNAG	4 cut(s)	210, 336, 410, 422
DpnI	GATC	2 cut(s)	162, 282
DpnII	GATC	2 cut(s)	160, 280
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	2 cut(s)	121, 132
FatI	CATG	2 cut(s)	117, 128
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	126, 133
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	126, 133
GluI	GCNGC	2 cut(s)	126, 133
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	121, 132
Hpy188I	TCNGA	4 cut(s)	156, 165, 370, 385
Hpy188III	TCNNGA	2 cut(s)	296, 305
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	9 cut(s)	30, 44, 128, 135, 233, 245, 254, 319, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 251, 413
HpyF3I	CTNAG	4 cut(s)	210, 336, 410, 422
Hsp92II	CATG	2 cut(s)	121, 132
Kzo9I	GATC	2 cut(s)	160, 280
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	125, 264, 354, 361, 397
Lsp1109I	GCAGC	2 cut(s)	112, 119
LweI	GCATC	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	162, 282
MboI	GATC	2 cut(s)	160, 280
MboII	GAAGA	5 cut(s)	178, 269, 272, 320, 337
MflI	RGATCY	2 cut(s)	160, 280
MhlI	GDGCHC	2 cut(s)	199, 348
MluCI	AATT	3 cut(s)	31, 169, 363
MnlI	CCTC	3 cut(s)	205, 220, 304
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	27, 251, 413
NdeII	GATC	2 cut(s)	160, 280
NlaIII	CATG	2 cut(s)	121, 132
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	127, 134
PspPI	GGNCC	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	160, 280
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	126, 133
Sau3AI	GATC	2 cut(s)	160, 280
Sau96I	GGNCC	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	199, 348
SetI	ASST	4 cut(s)	113, 242, 271, 337
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	3 cut(s)	31, 169, 363
SsiI	CCGC	3 cut(s)	21, 192, 352
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	3 cut(s)	31, 169, 363
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	125, 132
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.