Rw2G017780

Coiled-coil domain-containing protein 130-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006850
Physical Location & Seq
Forward (+)
22135045 .. 22135931
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017780.1

Sequence Viewer

Length: 777 bp
ATGGAGCCCAAAGCAGGGCTCTTTGAACAAGTTCCATGGTCAACATGCTTTGAGAGAGAGAGCACGAAAATTGGACCAAGTGGGTGCAATTCTATGATCGCAAAGGGTGTTCGGTTCAACGCTGAAAAAAAGCACGTCAGAAACTACTTTTCAACAAAGATATGGAGATTTACCAGGAAGGCTGCATGCTGCAAAGAGGAAATTGTTATTCTGACATATCCGAAGAATTGTCAGTATGTGATTATTAGTGGTGCTCAACAAAAGACCGAGGATTTTGACAATGAGGATGCGGAAACCCTTGCGCCTCCTGCAGATGAAGAAAGAGGTATGCTGGCGGATCCATTTTATCGTCTTGAACATCAAGAAAAGGATTGGCAAAAGAAGAAGCAAGCCGAGCCAATGCTACTCCTCTTAAAGAGAATTTCCGACCAAAGGCATTCAGATGACTATTCCCTTAACAAGTCCCTGAGGGCCAAACTTAGATCTCAAAAGAAAAGAGTCGCCGAAGAAGAGGCTGTTTCAAGGAGAATGGGCCTCAATATACAACTGCTTCCAGTAGCAGAAGAGGACACTGCCACTGCGTCATGGGTGAAGTTCTCTACCAAGTTTGACAAAAGTAGAAGGGATAAGCGAGCTTTGATTAATGCTTCTTCAATCTTCCTGGGTCATCTATTGCTGCTGCAGCATCCTGTGAGATTTAGGCTTTCATCGTGGTCACAGAACCCTGTTTCTTCAAGCAGGCAAAAGTGCACTCCTGTCTCAGTGAGACGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

258

Amino Acids

29.86

Weight (kDa)

9.59

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 28 - 210 1.1e-37 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 290, 335
AclWI GGATC 2 cut(s) 332, 345
AcsI RAATTY 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 14, 15, 432
AgsI TTSAA 7 cut(s) 26, 118, 153, 356, 522, 654, 735
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 173, 660
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
Alw21I GWGCWC 3 cut(s) 65, 256, 752
Alw26I GTCTC 2 cut(s) 760, 763
Alw44I GTGCAC 1 cut(s) 748
AlwI GGATC 2 cut(s) 332, 345
AoxI GGCC 2 cut(s) 471, 532
ApaLI GTGCAC 1 cut(s) 748
ApeKI GCWGC 5 cut(s) 182, 189, 676, 679, 682
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 74, 471, 532
AsuHPI GGTGA 1 cut(s) 601
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 752
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 9, 21
Bbv12I GWGCWC 3 cut(s) 65, 256, 752
BbvI GCAGC 5 cut(s) 169, 176, 663, 666, 694
BciT130I CCWGG 2 cut(s) 175, 662
BcoDI GTCTC 2 cut(s) 760, 763
BfaI CTAG 1 cut(s) 775
BfmI CTRYAG 2 cut(s) 309, 680
BglII AGATCT 1 cut(s) 482
BisI GCNGC 5 cut(s) 183, 190, 677, 680, 683
BlsI GCNGC 5 cut(s) 184, 191, 678, 681, 684
Bme1390I CCNGG 2 cut(s) 175, 662
Bme18I GGWCC 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 74, 471, 532
BmiI GGNNCC 2 cut(s) 6, 339
BmrFI CCNGG 2 cut(s) 175, 662
BmsI GCATC 2 cut(s) 277, 694
BsaJI CCNNGG 3 cut(s) 35, 267, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 15, 432
Bse1I ACTGG 1 cut(s) 554
Bse21I CCTNAGG 1 cut(s) 467
BseBI CCWGG 2 cut(s) 175, 662
BseDI CCNNGG 3 cut(s) 35, 267, 661
BseGI GGATG 2 cut(s) 292, 685
BseLI CCNNNNNNNGG 3 cut(s) 14, 15, 432
BseMII CTCAG 2 cut(s) 458, 774
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 398
BseSI GKGCMC 1 cut(s) 752
BseXI GCAGC 5 cut(s) 169, 176, 663, 666, 694
BshFI GGCC 2 cut(s) 473, 534
BsiHKAI GWGCWC 3 cut(s) 65, 256, 752
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 14, 15, 432
BsmAI GTCTC 2 cut(s) 760, 763
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 2 cut(s) 473, 534
Bsp1286I GDGCHC 5 cut(s) 9, 21, 65, 256, 752
Bsp143I GATC 3 cut(s) 96, 337, 482
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 2 cut(s) 290, 335
BspANI GGCC 2 cut(s) 473, 534
BspCNI CTCAG 2 cut(s) 459, 773
BspLI GGNNCC 2 cut(s) 6, 339
BspMAI CTGCAG 2 cut(s) 313, 684
BspPI GGATC 2 cut(s) 332, 345
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 3 cut(s) 35, 267, 661
BssMI GATC 3 cut(s) 96, 337, 482
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 175, 662
Bst6I CTCTTC 2 cut(s) 504, 558
BstC8I GCNNGC 5 cut(s) 187, 333, 390, 633, 740
BstDEI CTNAG 3 cut(s) 467, 479, 760
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 292, 685
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 99, 340, 485
BstMAI GTCTC 2 cut(s) 760, 763
BstMBI GATC 3 cut(s) 96, 337, 482
BstMWI GCNNNNNNNGC 3 cut(s) 308, 394, 682
BstNI CCWGG 2 cut(s) 175, 662
BstNSI RCATGY 2 cut(s) 48, 189
BstSCI CCNGG 2 cut(s) 173, 660
BstSFI CTRYAG 2 cut(s) 309, 680
BstSLI GKGCMC 1 cut(s) 752
BstV1I GCAGC 5 cut(s) 169, 176, 663, 666, 694
BstX2I RGATCY 2 cut(s) 337, 482
BstYI RGATCY 2 cut(s) 337, 482
Bsu36I CCTNAGG 1 cut(s) 467
BsuRI GGCC 2 cut(s) 473, 534
BtgI CCRYGG 1 cut(s) 35
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 292, 685
BtsI GCAGTG 2 cut(s) 570, 576
BtsIMutI CAGTG 3 cut(s) 570, 576, 768
Cac8I GCNNGC 5 cut(s) 187, 333, 390, 633, 740
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 74, 471, 532
CseI GACGC 1 cut(s) 570
CviAII CATG 4 cut(s) 36, 45, 186, 585
DdeI CTNAG 3 cut(s) 467, 479, 760
DpnI GATC 3 cut(s) 98, 339, 484
DpnII GATC 3 cut(s) 96, 337, 482
Eam1104I CTCTTC 2 cut(s) 504, 558
EarI CTCTTC 2 cut(s) 504, 558
EciI GGCGGA 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 9, 21
Eco47I GGWCC 1 cut(s) 74
Eco81I CCTNAGG 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 173, 660
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 9, 21
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 4 cut(s) 39, 48, 189, 588
FaqI GGGAC 1 cut(s) 448
FatI CATG 4 cut(s) 35, 44, 185, 584
Fnu4HI GCNGC 5 cut(s) 183, 190, 677, 680, 683
FokI GGATG 2 cut(s) 299, 672
FriOI GRGCYC 2 cut(s) 9, 21
Fsp4HI GCNGC 5 cut(s) 183, 190, 677, 680, 683
FspBI CTAG 1 cut(s) 775
GlaI GCGC 1 cut(s) 303
GluI GCNGC 5 cut(s) 183, 190, 677, 680, 683
HaeIII GGCC 2 cut(s) 473, 534
HgaI GACGC 1 cut(s) 570
HhaI GCGC 1 cut(s) 304
Hin1II CATG 4 cut(s) 39, 48, 189, 588
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 498, 771
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 2 cut(s) 42, 750
Hpy188I TCNGA 5 cut(s) 140, 213, 222, 427, 442
Hpy188III TCNNGA 2 cut(s) 353, 362
Hpy8I GTNNAC 2 cut(s) 42, 750
HpyAV CCTTC 2 cut(s) 172, 615
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 87, 185, 192, 311, 682, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 394, 682
HpyF3I CTNAG 3 cut(s) 467, 479, 760
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 39, 48, 189, 588
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 96, 337, 482
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 169, 176, 663, 666, 694
LweI GCATC 2 cut(s) 277, 694
MaeI CTAG 1 cut(s) 775
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 714
MalI GATC 3 cut(s) 98, 339, 484
MboI GATC 3 cut(s) 96, 337, 482
MboII GAAGA 9 cut(s) 235, 329, 394, 518, 521, 575, 642, 649, 723
MflI RGATCY 2 cut(s) 337, 482
MhlI GDGCHC 5 cut(s) 9, 21, 65, 256, 752
MluCI AATT 5 cut(s) 69, 88, 201, 226, 420
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 450
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 413, 456, 642
MslI CAYNNNNRTG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 175, 662
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 2 cut(s) 175, 662
MwoI GCNNNNNNNGC 3 cut(s) 308, 394, 682
NcoI CCATGG 1 cut(s) 35
NdeII GATC 3 cut(s) 96, 337, 482
NlaIII CATG 4 cut(s) 39, 48, 189, 588
NlaIV GGNNCC 2 cut(s) 6, 339
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 714
NspI RCATGY 2 cut(s) 48, 189
PaeI GCATGC 1 cut(s) 189
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 771
PkrI GCNGC 5 cut(s) 184, 191, 678, 681, 684
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 173, 660
PspGI CCWGG 2 cut(s) 173, 660
PspN4I GGNNCC 2 cut(s) 6, 339
PspPI GGNCC 3 cut(s) 74, 471, 532
PstI CTGCAG 2 cut(s) 313, 684
PsuI RGATCY 2 cut(s) 337, 482
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 3 cut(s) 413, 456, 642
SatI GCNGC 5 cut(s) 183, 190, 677, 680, 683
Sau3AI GATC 3 cut(s) 96, 337, 482
Sau96I GGNCC 3 cut(s) 74, 471, 532
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 2 cut(s) 175, 662
SduI GDGCHC 5 cut(s) 9, 21, 65, 256, 752
SetI ASST 3 cut(s) 138, 328, 637
SfaNI GCATC 2 cut(s) 277, 694
SfcI CTRYAG 2 cut(s) 309, 680
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 441
SphI GCATGC 1 cut(s) 189
Sse9I AATT 5 cut(s) 69, 88, 201, 226, 420
SsiI CCGC 2 cut(s) 290, 335
SspMI CTAG 1 cut(s) 775
StyD4I CCNGG 2 cut(s) 173, 660
StyI CCWWGG 1 cut(s) 35
TaiI ACGT 1 cut(s) 138
TaqII GACCGA 1 cut(s) 281
TasI AATT 5 cut(s) 69, 88, 201, 226, 420
TfiI GAWTC 1 cut(s) 771
Tru1I TTAA 3 cut(s) 413, 456, 642
Tru9I TTAA 3 cut(s) 413, 456, 642
TscAI CASTG 3 cut(s) 577, 583, 768
TseFI GTSAC 1 cut(s) 714
TseI GCWGC 5 cut(s) 182, 189, 676, 679, 682
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 2 cut(s) 330, 696
TspRI CASTG 3 cut(s) 577, 583, 768
VneI GTGCAC 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 74
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 1 cut(s) 420
XceI RCATGY 2 cut(s) 48, 189
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.