Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005679.1

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

25312 .. 25896

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005679.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgaaggctgcatgctgcaaagaggaaattgttattctgacagatccgaagaattgtcagtatgtgattattagtggtgctcaacaaaagaccgaggattttgacaatgaggatgcggaaacccttgcgcctcctgcagatgaagaaagaggtatgttggcggatccattttatcgtcttgaacatcaagaaaaggattggaaaaagaagaagcaagccgagccaatgctactcctcttaaagagaatttccgaccaaaggcattcagatgactattcccttagcaagtccctgagggccaaacttagatctcaaaagaaaagagtcgctgaagaagaggctgtttcaaggagaatgggcctcaatatacgactgcttccagtagcagaagaggacactgccactgcgtcacaggtgaagttctctaccaagtttgacaaaagtagaagggataagcgagctttgattaatgcttcttcaatctttcctgggtcatctacgtttcccatcgtcaataagaaaattctgggactggaatttaagagaaggaaagtaagtgctgctgcagcatcctgcgagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

194

Amino Acids

22.02

Weight (kDa)

9.21

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 161
AclWI	GGATC	3 cut(s)	38, 158, 171
AcsI	RAATTY	3 cut(s)	246, 522, 536
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	182, 348, 480
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	38, 158, 171
AoxI	GGCC	2 cut(s)	297, 358
ApeKI	GCWGC	5 cut(s)	8, 15, 560, 563, 566
ApoI	RAATTY	3 cut(s)	246, 522, 536
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	297, 358
AsuHPI	GGTGA	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	2, 547, 550, 578
BccI	CCATC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	135, 564
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	5 cut(s)	9, 16, 561, 564, 567
BlsI	GCNGC	5 cut(s)	10, 17, 562, 565, 568
Bme1390I	CCNGG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	297, 358
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	103, 578
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	93, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	380, 537
Bse21I	CCTNAGG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	93, 488
BseGI	GGATG	2 cut(s)	118, 569
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	380, 537
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	2, 547, 550, 578
BshFI	GGCC	2 cut(s)	299, 360
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	274, 543
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	274, 543
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	299, 360
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	43, 163, 308
BspACI	CCGC	2 cut(s)	116, 161
BspANI	GGCC	2 cut(s)	299, 360
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	2 cut(s)	139, 568
BspPI	GGATC	3 cut(s)	38, 158, 171
BsrI	ACTGG	2 cut(s)	380, 537
BssECI	CCNNGG	2 cut(s)	93, 488
BssMI	GATC	3 cut(s)	43, 163, 308
Bst2UI	CCWGG	1 cut(s)	489
Bst6I	CTCTTC	2 cut(s)	330, 384
BstC8I	GCNNGC	3 cut(s)	13, 216, 459
BstDEI	CTNAG	3 cut(s)	281, 293, 305
BstF5I	GGATG	2 cut(s)	118, 569
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	46, 166, 311
BstMBI	GATC	3 cut(s)	43, 163, 308
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 220, 566
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	135, 564
BstV1I	GCAGC	4 cut(s)	2, 547, 550, 578
BstX2I	RGATCY	3 cut(s)	43, 163, 308
BstYI	RGATCY	3 cut(s)	43, 163, 308
Bsu36I	CCTNAGG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	299, 360
BtsCI	GGATG	2 cut(s)	118, 569
BtsI	GCAGTG	2 cut(s)	396, 402
BtsIMutI	CAGTG	2 cut(s)	396, 402
Cac8I	GCNNGC	3 cut(s)	13, 216, 459
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	297, 358
CseI	GACGC	1 cut(s)	396
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	7 cut(s)	8, 218, 223, 299, 341, 360, 461
CviKI_1	RGCY	7 cut(s)	8, 218, 223, 299, 341, 360, 461
DdeI	CTNAG	3 cut(s)	281, 293, 305
DpnI	GATC	3 cut(s)	45, 165, 310
DpnII	GATC	3 cut(s)	43, 163, 308
Eam1104I	CTCTTC	2 cut(s)	330, 384
EarI	CTCTTC	2 cut(s)	330, 384
EciI	GGCGGA	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 63, 155, 368
FaqI	GGGAC	2 cut(s)	274, 543
FatI	CATG	1 cut(s)	11
Fnu4HI	GCNGC	5 cut(s)	9, 16, 561, 564, 567
FokI	GGATG	2 cut(s)	125, 556
Fsp4HI	GCNGC	5 cut(s)	9, 16, 561, 564, 567
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	9, 16, 561, 564, 567
HaeIII	GGCC	2 cut(s)	299, 360
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	324
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	39, 48, 253, 268
Hpy188III	TCNNGA	2 cut(s)	179, 188
HpyAV	CCTTC	2 cut(s)	441, 540
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	4 cut(s)	11, 18, 137, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 220, 566
HpyF3I	CTNAG	3 cut(s)	281, 293, 305
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	43, 163, 308
LpnPI	CCDG	8 cut(s)	147, 305, 393, 398, 474, 501, 512, 518
Lsp1109I	GCAGC	4 cut(s)	2, 547, 550, 578
LweI	GCATC	2 cut(s)	103, 578
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	3 cut(s)	45, 165, 310
MboI	GATC	3 cut(s)	43, 163, 308
MboII	GAAGA	7 cut(s)	61, 155, 220, 344, 347, 401, 468
MflI	RGATCY	3 cut(s)	43, 163, 308
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	5 cut(s)	27, 52, 246, 522, 536
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	276
MseI	TTAA	3 cut(s)	239, 468, 540
MslI	CAYNNNNRTG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	134, 220, 566
NdeII	GATC	3 cut(s)	43, 163, 308
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	408
NspI	RCATGY	1 cut(s)	15
PaeI	GCATGC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	5 cut(s)	10, 17, 562, 565, 568
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	297, 358
PstI	CTGCAG	2 cut(s)	139, 568
PsuI	RGATCY	3 cut(s)	43, 163, 308
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	239, 468, 540
SatI	GCNGC	5 cut(s)	9, 16, 561, 564, 567
Sau3AI	GATC	3 cut(s)	43, 163, 308
Sau96I	GGNCC	2 cut(s)	297, 358
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	154, 417, 463, 503
SfaNI	GCATC	2 cut(s)	103, 578
SfcI	CTRYAG	2 cut(s)	135, 564
SmiMI	CAYNNNNRTG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	15
Sse9I	AATT	5 cut(s)	27, 52, 246, 522, 536
SsiI	CCGC	2 cut(s)	116, 161
StyD4I	CCNGG	1 cut(s)	487
TaiI	ACGT	1 cut(s)	503
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	5 cut(s)	27, 52, 246, 522, 536
Tru1I	TTAA	3 cut(s)	239, 468, 540
Tru9I	TTAA	3 cut(s)	239, 468, 540
TscAI	CASTG	2 cut(s)	403, 409
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	5 cut(s)	8, 15, 560, 563, 566
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	17, 156
TspRI	CASTG	2 cut(s)	403, 409
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	3 cut(s)	246, 522, 536
XceI	RCATGY	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.