Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2699467 .. 2702937

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04290.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCCAACAGGAAAAAATTGAGAACCGACCAGGAAAGGGGGCATAAGAAAATTTCAGGAACCAAAACTTCAACGGAGCGATTGAATCGAGCGGAACCACTCCGGCGACCGAGTAGCAATTCAGGAAAGAGAAAATGGACAGATAGAAATACTTGGGCTTGTGATGAATCTTTTTCTACACTTGCAGCTGCTAGGGCAGACAACTTTTATTATCCCCCAGAATGGTCGCCAAAGAAGGGTTCCTTGAACAAGTTCAATGGTCAACATGCTCTGAGGGAGAGAGCAAGGAAATTGGACCAGGGGATTTTGATTATAAGGTTCGAGATGCCTTACCATATATGGTGCGGTGGTTGCAATTCTATGATTGCAAAGGGTGTTCGTTTTAATGCAGAAAAAAAGCAAGTTGGAAATTACTATTCTACAAAGATATGGAGCTTTACCATGAAGTCTCCATGCTGCAAACAAGAGATTGTTATGCAGATAGATCCAAAGAATTGCAAATATGTGATTATTAGTGGGGCCACACAGAAGAATGAGGAATTTGACGTTGAGGATGCGGAAACCTTTGAACTTCCTGCTGATGAAGAAAGAGGAAAGCTTGCGGATCCATTTTATCGACTTGAACATCAAGAAGAGGATTTGCAAAAGAAGAAAGAAGCCGAGCCAGTACTCGTTCGCCTACAGCGAATTTCTGATGACAGGCATTTAGATGACTATTCCCTCAACAAGGCCCTCAGAGCCAAACTTAGATCTCAAAAGAAAAGAGTTGCCGAAGAAGAGGCTACGTCAAGGAAGATGGGTCTCGGTATACGACTGCTTCCGGTGGCAGAGGAGGATGCTGCTGCTGCATCACGTGTGAAGTTCGTTTCCAAGTTTGAAAAAAATAGGAAGAATAAGCAAGCACTAATCAACGCTGCTTCAATTTTTCCTGGCTCATCTGGGAGTTCTATGTCGAATAAGAAGAGTTTGGAACTACAATCTAAGAGAAGAAGAATAAGTGCTGCTGCTGCGTCCAACTTACTTACAGGCGGGTTCAAGCCATCATCATGGTCTCAGAATACGGTTTCTTCAGGCAGGCTAAATGGAACGGCAGTCAAAGTGAAACGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

371

Amino Acids

42.06

Weight (kDa)

9.91

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	808
AciI	CCGC	5 cut(s)	92, 345, 557, 602, 1029
AclWI	GGATC	3 cut(s)	479, 599, 612
AcsI	RAATTY	3 cut(s)	51, 539, 687
AcuI	CTGAAG	1 cut(s)	1053
AcvI	CACGTG	1 cut(s)	854
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	4 cut(s)	37, 222, 236, 727
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	9 cut(s)	72, 85, 247, 256, 569, 623, 878, 921, 1036
AjnI	CCWGG	3 cut(s)	30, 297, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	3 cut(s)	188, 435, 598
AluI	AGCT	3 cut(s)	188, 435, 598
Alw26I	GTCTC	3 cut(s)	453, 806, 1056
AlwI	GGATC	3 cut(s)	479, 599, 612
AoxI	GGCC	2 cut(s)	519, 729
ApoI	RAATTY	3 cut(s)	51, 539, 687
Asp700I	GAANNNNTTC	2 cut(s)	251, 1106
AspS9I	GGNCC	3 cut(s)	295, 519, 730
AvaII	GGWCC	1 cut(s)	295
BamHI	GGATCC	1 cut(s)	604
BbrPI	CACGTG	1 cut(s)	854
BccI	CCATC	2 cut(s)	790, 1048
BceAI	ACGGC	1 cut(s)	1104
BciT130I	CCWGG	3 cut(s)	32, 299, 930
BcoDI	GTCTC	3 cut(s)	453, 806, 1056
BfaI	CTAG	2 cut(s)	192, 1111
BfmI	CTRYAG	1 cut(s)	680
BglII	AGATCT	1 cut(s)	749
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	3 cut(s)	32, 299, 930
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	295, 519, 730
BmiI	GGNNCC	5 cut(s)	61, 96, 241, 520, 606
BmrFI	CCNGG	3 cut(s)	32, 299, 930
BmsI	GCATC	4 cut(s)	315, 544, 826, 857
BsaAI	YACGTR	1 cut(s)	854
BsaI	GGTCTC	2 cut(s)	806, 1056
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 222, 236, 727
Bse1I	ACTGG	1 cut(s)	665
BseBI	CCWGG	3 cut(s)	32, 299, 930
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	559, 841
BseLI	CCNNNNNNNGG	4 cut(s)	37, 222, 236, 727
BseMII	CTCAG	3 cut(s)	263, 748, 1067
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	845
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	521, 731
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	103, 821
BslI	CCNNNNNNNGG	4 cut(s)	37, 222, 236, 727
BsmAI	GTCTC	3 cut(s)	453, 806, 1056
BsnI	GGCC	2 cut(s)	521, 731
Bso31I	GGTCTC	2 cut(s)	806, 1056
Bsp143I	GATC	3 cut(s)	484, 604, 749
BspACI	CCGC	5 cut(s)	92, 345, 557, 602, 1029
BspANI	GGCC	2 cut(s)	521, 731
BspCNI	CTCAG	3 cut(s)	264, 747, 1066
BspLI	GGNNCC	5 cut(s)	61, 96, 241, 520, 606
BspPI	GGATC	3 cut(s)	479, 599, 612
BspTNI	GGTCTC	2 cut(s)	806, 1056
BsrBI	CCGCTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	484, 604, 749
BssNAI	GTATAC	1 cut(s)	809
Bst1107I	GTATAC	1 cut(s)	809
Bst2UI	CCWGG	3 cut(s)	32, 299, 930
Bst4CI	ACNGT	1 cut(s)	1063
Bst6I	CTCTTC	3 cut(s)	627, 771, 956
BstBAI	YACGTR	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	600, 900, 1076
BstDEI	CTNAG	5 cut(s)	272, 734, 746, 981, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	559, 841
BstKTI	GATC	3 cut(s)	487, 607, 752
BstMAI	GTCTC	3 cut(s)	453, 806, 1056
BstMBI	GATC	3 cut(s)	484, 604, 749
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 351, 737, 845, 1007
BstNI	CCWGG	3 cut(s)	32, 299, 930
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	30, 297, 928
BstSFI	CTRYAG	1 cut(s)	680
BstX2I	RGATCY	3 cut(s)	484, 604, 749
BstXI	CCANNNNNNTGG	1 cut(s)	1047
BstYI	RGATCY	3 cut(s)	484, 604, 749
BstZ17I	GTATAC	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	521, 731
BtsCI	GGATG	2 cut(s)	559, 841
Cac8I	GCNNGC	3 cut(s)	600, 900, 1076
Cfr13I	GGNCC	3 cut(s)	295, 519, 730
CseI	GACGC	1 cut(s)	999
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	4 cut(s)	266, 442, 453, 1047
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	5 cut(s)	272, 734, 746, 981, 1053
DpnI	GATC	3 cut(s)	486, 606, 751
DpnII	GATC	3 cut(s)	484, 604, 749
Eam1104I	CTCTTC	3 cut(s)	627, 771, 956
EarI	CTCTTC	3 cut(s)	627, 771, 956
Eco31I	GGTCTC	2 cut(s)	806, 1056
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	1053
Eco72I	CACGTG	1 cut(s)	854
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	3 cut(s)	30, 297, 928
FaeI	CATG	4 cut(s)	269, 445, 456, 1050
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	4 cut(s)	265, 441, 452, 1046
FauI	CCCGC	1 cut(s)	1022
FblI	GTMKAC	1 cut(s)	808
FokI	GGATG	2 cut(s)	566, 848
FspBI	CTAG	2 cut(s)	192, 1111
HaeIII	GGCC	2 cut(s)	521, 731
HapII	CCGG	2 cut(s)	103, 821
HgaI	GACGC	1 cut(s)	999
Hin1II	CATG	4 cut(s)	269, 445, 456, 1050
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	85, 167
HpaII	CCGG	2 cut(s)	103, 821
Hpy166II	GTNNAC	2 cut(s)	263, 809
Hpy188I	TCNGA	4 cut(s)	273, 694, 737, 1056
Hpy188III	TCNNGA	4 cut(s)	57, 123, 322, 629
Hpy8I	GTNNAC	2 cut(s)	263, 809
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	1063
HpyCH4IV	ACGT	3 cut(s)	546, 785, 853
HpyCH4V	TGCA	9 cut(s)	185, 354, 368, 389, 459, 478, 498, 643, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 351, 737, 845, 1007
HpyF3I	CTNAG	5 cut(s)	272, 734, 746, 981, 1053
HpySE526I	ACGT	3 cut(s)	546, 785, 853
Hsp92II	CATG	4 cut(s)	269, 445, 456, 1050
Kzo9I	GATC	3 cut(s)	484, 604, 749
LmnI	GCTCC	2 cut(s)	76, 432
LweI	GCATC	4 cut(s)	315, 544, 826, 857
MaeI	CTAG	2 cut(s)	192, 1111
MaeII	ACGT	3 cut(s)	546, 785, 853
MalI	GATC	3 cut(s)	486, 606, 751
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	3 cut(s)	484, 604, 749
MflI	RGATCY	3 cut(s)	484, 604, 749
MmeI	TCCRAC	3 cut(s)	30, 385, 1038
MroXI	GAANNNNTTC	2 cut(s)	251, 1106
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	708, 1045
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	103, 821
MspR9I	CCNGG	3 cut(s)	32, 299, 930
MvaI	CCWGG	3 cut(s)	32, 299, 930
MwoI	GCNNNNNNNGC	5 cut(s)	194, 351, 737, 845, 1007
NdeII	GATC	3 cut(s)	484, 604, 749
NlaIII	CATG	4 cut(s)	269, 445, 456, 1050
NlaIV	GGNNCC	5 cut(s)	61, 96, 241, 520, 606
NmeAIII	GCCGAG	1 cut(s)	685
NspI	RCATGY	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PdmI	GAANNNNTTC	2 cut(s)	251, 1106
PfeI	GAWTC	2 cut(s)	85, 167
PmaCI	CACGTG	1 cut(s)	854
PmlI	CACGTG	1 cut(s)	854
Ppu21I	YACGTR	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	30, 297, 928
PspCI	CACGTG	1 cut(s)	854
PspGI	CCWGG	3 cut(s)	30, 297, 928
PspN4I	GGNNCC	5 cut(s)	61, 96, 241, 520, 606
PspPI	GGNCC	3 cut(s)	295, 519, 730
PsuI	RGATCY	3 cut(s)	484, 604, 749
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
RseI	CAYNNNNRTG	2 cut(s)	708, 1045
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	3 cut(s)	484, 604, 749
Sau96I	GGNCC	3 cut(s)	295, 519, 730
ScaI	AGTACT	1 cut(s)	669
ScrFI	CCNGG	3 cut(s)	32, 299, 930
SetI	ASST	8 cut(s)	190, 320, 437, 549, 566, 600, 788, 856
SfaNI	GCATC	4 cut(s)	315, 544, 826, 857
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	708, 1045
SsiI	CCGC	5 cut(s)	92, 345, 557, 602, 1029
SspMI	CTAG	2 cut(s)	192, 1111
StyD4I	CCNGG	3 cut(s)	30, 297, 928
TaaI	ACNGT	1 cut(s)	1063
TaiI	ACGT	3 cut(s)	549, 788, 856
TaqI	TCGA	4 cut(s)	88, 321, 616, 953
TaqII	GACCGA	1 cut(s)	124
TatI	WGTACW	1 cut(s)	667
TfiI	GAWTC	2 cut(s)	85, 167
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	180, 458, 597
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	725
XapI	RAATTY	3 cut(s)	51, 539, 687
XceI	RCATGY	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	808
XmnI	GAANNNNTTC	2 cut(s)	251, 1106
XspI	CTAG	2 cut(s)	192, 1111
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.