Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

57691466 .. 57694400

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTTCACTTGCAGCTGCTAGAGCAGACAACTTCTATTATCCTCCGGAATGGACCCCGAAGCAGGGTTCTTTGAACAAGTTTCATGGTCAGCATGCTCTGAGGGAGCGAGCGCGGAAACTGGATCAGGGAATTTTGATCATAAGGTTTGAGATGCCTTACAATATATGGTGCGGTGGGTGCAATTCTATGATTGCAAAGGGTGTTCGGTTCAATGCTGAAAAAAAGCAAGTGGGAAACTATTATTCAACAAAGGCTGCATGCTGCAAACAGGAGATTGTTATTCAGACAGATCCGAAGAATTGTCAGTATGTGATTATTAGCGGGGCTCAACAAAAGACTGAGGATTTTGACATTGAGGATGCAGAAACCTTTGCACTTCCTGCGGAAGAAGAAAAAGGTATGCTTGCAGATCCGTTTTACCGTCTTGAACATCAAGAAGAGGATTTGCAAAAGAAGAAAGAAGCTGAGCCCGTACTCGTCCGCTTGCAGAGAATTTCTGACGACAGGCATTCAGATGATTATGCCCTTAACAAGGCTCTCAGGGCCAAACTTAGATCTCAAAAGAAAAGAGTTGCTGAAGAAGAGGCTGCTTCAAGGAGAATGGGCCTCCATATACGACTGCTTCCAGCGGCAGAAGAGGATACTGCCACTGCATCACGGATGAAATTCTCTTCCAAGTTTGACAGAAATAGGAAGGATAAGCGAGCTTTGATTAATGCTTCTTCAATCTTTCCTGGGTCATCTGGGACTTCTAAGAAAGCCTTGGAACTTGAATCTAAAGAGAAAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

265

Amino Acids

30.15

Weight (kDa)

9.13

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saf4_Yju2	PF04502	13 - 238	1.1e-51	Saf4/Yju2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	6 cut(s)	115, 174, 324, 386, 484, 632
AclWI	GGATC	3 cut(s)	132, 287, 407
AcsI	RAATTY	3 cut(s)	132, 495, 668
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 535
AgsI	TTSAA	7 cut(s)	76, 214, 249, 431, 597, 729, 776
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	3 cut(s)	17, 467, 710
AluI	AGCT	3 cut(s)	17, 467, 710
AlwI	GGATC	3 cut(s)	132, 287, 407
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	546, 607
ApeKI	GCWGC	5 cut(s)	14, 17, 257, 264, 590
ApoI	RAATTY	3 cut(s)	132, 495, 668
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	54, 546, 607
AvaII	GGWCC	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	331, 474
BbvI	GCAGC	5 cut(s)	4, 26, 244, 251, 577
BciT130I	CCWGG	1 cut(s)	738
BciVI	GTATCC	1 cut(s)	637
BclI	TGATCA	1 cut(s)	138
BfaI	CTAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	557
BisI	GCNGC	6 cut(s)	15, 18, 258, 265, 591, 633
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	6 cut(s)	16, 19, 259, 266, 592, 634
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	54, 546, 607
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	3 cut(s)	144, 352, 665
Bpu1102I	GCTNAGC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	737, 765
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 535
Bse1I	ACTGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	737, 765
BseGI	GGATG	2 cut(s)	367, 669
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 535
BseMII	CTCAG	4 cut(s)	92, 333, 459, 556
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	5 cut(s)	4, 26, 244, 251, 577
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	548, 609
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 535
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	548, 609
Bsp1286I	GDGCHC	2 cut(s)	331, 474
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	124, 138, 292, 412, 557
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	6 cut(s)	115, 174, 324, 386, 484, 632
BspANI	GGCC	2 cut(s)	548, 609
BspCNI	CTCAG	4 cut(s)	93, 334, 460, 555
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	3 cut(s)	132, 287, 407
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	737, 765
BssMI	GATC	5 cut(s)	124, 138, 292, 412, 557
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	4 cut(s)	435, 579, 633, 679
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	6 cut(s)	96, 111, 262, 408, 488, 708
BstDEI	CTNAG	6 cut(s)	101, 342, 468, 542, 554, 756
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	367, 669
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	127, 141, 295, 415, 560
BstMBI	GATC	5 cut(s)	124, 138, 292, 412, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 180, 383, 545
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	2 cut(s)	98, 264
BstSCI	CCNGG	1 cut(s)	736
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	5 cut(s)	4, 26, 244, 251, 577
BstX2I	RGATCY	3 cut(s)	292, 412, 557
BstYI	RGATCY	3 cut(s)	292, 412, 557
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	548, 609
BtsCI	GGATG	2 cut(s)	367, 669
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	6 cut(s)	96, 111, 262, 408, 488, 708
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	54, 546, 607
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	3 cut(s)	86, 95, 261
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	6 cut(s)	101, 342, 468, 542, 554, 756
DpnI	GATC	5 cut(s)	126, 140, 294, 414, 559
DpnII	GATC	5 cut(s)	124, 138, 292, 412, 557
Eam1104I	CTCTTC	4 cut(s)	435, 579, 633, 679
EarI	CTCTTC	4 cut(s)	435, 579, 633, 679
Eco130I	CCWWGG	1 cut(s)	765
Eco24I	GRGCYC	2 cut(s)	331, 474
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	2 cut(s)	331, 474
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	3 cut(s)	89, 98, 264
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 749, 781
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	3 cut(s)	85, 94, 260
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	6 cut(s)	15, 18, 258, 265, 591, 633
FokI	GGATG	2 cut(s)	374, 676
FriOI	GRGCYC	2 cut(s)	331, 474
Fsp4HI	GCNGC	6 cut(s)	15, 18, 258, 265, 591, 633
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	6 cut(s)	15, 18, 258, 265, 591, 633
HaeIII	GGCC	2 cut(s)	548, 609
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	89, 98, 264
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	776
HpaII	CCGG	1 cut(s)	47
Hpy188I	TCNGA	5 cut(s)	102, 288, 297, 502, 517
Hpy188III	TCNNGA	3 cut(s)	47, 428, 437
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 180, 383, 545
HpyF3I	CTNAG	6 cut(s)	101, 342, 468, 542, 554, 756
Hsp92II	CATG	3 cut(s)	89, 98, 264
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	124, 138, 292, 412, 557
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	5 cut(s)	4, 26, 244, 251, 577
LweI	GCATC	3 cut(s)	144, 352, 665
MaeI	CTAG	1 cut(s)	21
MalI	GATC	5 cut(s)	126, 140, 294, 414, 559
MboI	GATC	5 cut(s)	124, 138, 292, 412, 557
MflI	RGATCY	3 cut(s)	292, 412, 557
MhlI	GDGCHC	2 cut(s)	331, 474
MluCI	AATT	5 cut(s)	132, 184, 301, 495, 668
MnlI	CCTC	8 cut(s)	54, 96, 337, 352, 436, 580, 620, 634
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	2 cut(s)	531, 717
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	2 cut(s)	17, 632
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	4 cut(s)	23, 180, 383, 545
NdeII	GATC	5 cut(s)	124, 138, 292, 412, 557
NlaIII	CATG	3 cut(s)	89, 98, 264
NlaIV	GGNNCC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	98, 264
PaeI	GCATGC	2 cut(s)	98, 264
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	6 cut(s)	16, 19, 259, 266, 592, 634
PshBI	ATTAAT	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	3 cut(s)	54, 546, 607
PsuI	RGATCY	3 cut(s)	292, 412, 557
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	531, 717
SatI	GCNGC	6 cut(s)	15, 18, 258, 265, 591, 633
Sau3AI	GATC	5 cut(s)	124, 138, 292, 412, 557
Sau96I	GGNCC	3 cut(s)	54, 546, 607
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	331, 474
SetI	ASST	6 cut(s)	19, 149, 374, 403, 469, 712
SfaNI	GCATC	3 cut(s)	144, 352, 665
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	516
SphI	GCATGC	2 cut(s)	98, 264
Sse9I	AATT	5 cut(s)	132, 184, 301, 495, 668
SsiI	CCGC	6 cut(s)	115, 174, 324, 386, 484, 632
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	1 cut(s)	425
TasI	AATT	5 cut(s)	132, 184, 301, 495, 668
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	531, 717
Tru9I	TTAA	2 cut(s)	531, 717
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	5 cut(s)	14, 17, 257, 264, 590
TspDTI	ATGAA	2 cut(s)	74, 680
TspGWI	ACGGA	2 cut(s)	405, 676
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	717
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	3 cut(s)	132, 495, 668
XceI	RCATGY	2 cut(s)	98, 264
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.