Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006850

Physical Location & Seq

Genomic Coordinates Reverse (-)

68796907 .. 68797899

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTTCACTTGCAGCTGCTAGAGCTGACAACTGTTACTATCCCCCAGAATGGAACCCAAATCAGGGCTCTTTGAACAAGTTCCATGCTCAACATGCTTTGAGAGAGAAAGCACGAAAATTGGACCTAGGTATTCTGATTATAAGGTTTGAGATGCCTTATAATATATGGTGCAGTGGGTGCAATTCTATGATCGCAAAGGGTGTTCGGTTCAACGCTGAAAAAAACCATGTCGGAAACTACTTTACAACAAAGATATGGAGCTTCACCATGAAGGCTGCATGCTGCAAAGAGGAAATTGTTATTCAGACAGATCCGAAGAATTGTCAGTATGTGATTGTTAGTGGTGCTCAACATAAGACCGAGGATTTTGACAATGAGGATGCGGAAACCCTGGCGCTTCCTGCAGATGAAGAAAGAGGTATGCTGGCGGATCCATTTTATCGTCTTGAACATCAAGAAAAGGATTTGCAAAAGAAGAAGCAAGCCGAGCCAATGCTACCACTCTTAAAGAGAATTTCCGACCAGAGGCATTCAGATGACTATTCCCTTAAAATTTACAGCGATTCTACACTTAACAAGTCCGTGAGGGCCAAACTTAGATCTCAAAAGAAAAGAGTCGCTAAAGAAGAGGCTGCTTCAAGGAGAATGGGCCTCAATATACGACTGCTTCCAGTAGCAGAAGAGGACACTGCCGCTGCGTCACGGGTGAAGTTCTTTACCAAGTTTGACAAAAGTAGAAGGGATAAGCAAGCTTTGATTAATGCTTCTTCAATCTTTCCTGGGTCATCTACGTTTCCCATCGTCAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

271

Amino Acids

30.93

Weight (kDa)

9.18

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saf4_Yju2	PF04502	13 - 248	1.4e-55	Saf4/Yju2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25682 AT1G25682
fragaria_vesca	FvH4_1g20000 FvH4_4g28180 FvH4_4g28180 FvH4_4g28180
malus_domestica	MD13G1047300.v1.1 MD16G1049100.v1.1
prunus_persica	Prupe.1G304600_v2.0.a1
pyrus_communis	pycom13g04140 pycom16g04290
rosa_chinensis	RchiOBHm_Chr4g0435941
rosa_laevigata	RLG00000006547 RLG00000017940
rosa_multiflora	Rmu_co8406275.1_g000001 Rmu_sc0005679.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131970 Rroxscaffold_5G00377110
rosa_rugosa	Rorug02G0177400 Rorug04G0290800
rosa_samantha	Rh4AG345100 Rh4BG354000 Rh4CG368400 Rh4DG347800
rosa_wichuraiana	Rw2G017780 Rw4G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	143, 162
AciI	CCGC	3 cut(s)	386, 431, 696
AclWI	GGATC	3 cut(s)	308, 428, 441
AcsI	RAATTY	2 cut(s)	516, 555
AfiI	CCNNNNNNNGG	4 cut(s)	51, 64, 65, 528
AgsI	TTSAA	5 cut(s)	76, 214, 452, 642, 774
AjnI	CCWGG	2 cut(s)	393, 781
AluBI	AGCT	4 cut(s)	17, 26, 264, 755
AluI	AGCT	4 cut(s)	17, 26, 264, 755
Alw21I	GWGCWC	1 cut(s)	352
AlwI	GGATC	3 cut(s)	308, 428, 441
AoxI	GGCC	2 cut(s)	591, 652
ApeKI	GCWGC	6 cut(s)	14, 17, 278, 285, 635, 698
ApoI	RAATTY	2 cut(s)	516, 555
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	124, 591, 652
AsuHPI	GGTGA	2 cut(s)	259, 721
AvaII	GGWCC	1 cut(s)	124
AvrII	CCTAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	6 cut(s)	4, 26, 265, 272, 622, 685
BccI	CCATC	1 cut(s)	809
BciT130I	CCWGG	2 cut(s)	395, 783
BfaI	CTAG	2 cut(s)	21, 128
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	401
BglII	AGATCT	1 cut(s)	602
BisI	GCNGC	7 cut(s)	15, 18, 279, 286, 636, 696, 699
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	7 cut(s)	16, 19, 280, 287, 637, 697, 700
Bme1390I	CCNGG	2 cut(s)	395, 783
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	124, 591, 652
BmiI	GGNNCC	2 cut(s)	56, 435
BmrFI	CCNGG	2 cut(s)	395, 783
BmsI	GCATC	2 cut(s)	144, 373
BsaJI	CCNNGG	4 cut(s)	127, 363, 393, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 64, 65, 528
Bse1I	ACTGG	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	395, 783
BseDI	CCNNGG	4 cut(s)	127, 363, 393, 782
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	4 cut(s)	51, 64, 65, 528
BseNI	ACTGG	1 cut(s)	674
BseXI	GCAGC	6 cut(s)	4, 26, 265, 272, 622, 685
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	593, 654
BsiHKAI	GWGCWC	1 cut(s)	352
BslI	CCNNNNNNNGG	4 cut(s)	51, 64, 65, 528
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	593, 654
Bsp1286I	GDGCHC	2 cut(s)	71, 352
Bsp143I	GATC	4 cut(s)	192, 313, 433, 602
BspACI	CCGC	3 cut(s)	386, 431, 696
BspANI	GGCC	2 cut(s)	593, 654
BspLI	GGNNCC	2 cut(s)	56, 435
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	3 cut(s)	308, 428, 441
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	4 cut(s)	127, 363, 393, 782
BssMI	GATC	4 cut(s)	192, 313, 433, 602
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	395, 783
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	624, 678
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	283, 429, 486, 753
BstDEI	CTNAG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	4 cut(s)	195, 316, 436, 605
BstMBI	GATC	4 cut(s)	192, 313, 433, 602
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 95, 180, 404, 490
BstNI	CCWGG	2 cut(s)	395, 783
BstNSI	RCATGY	2 cut(s)	98, 285
BstSCI	CCNGG	2 cut(s)	393, 781
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	6 cut(s)	4, 26, 265, 272, 622, 685
BstX2I	RGATCY	3 cut(s)	313, 433, 602
BstYI	RGATCY	3 cut(s)	313, 433, 602
BsuRI	GGCC	2 cut(s)	593, 654
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	2 cut(s)	181, 690
BtsIMutI	CAGTG	2 cut(s)	181, 690
Cac8I	GCNNGC	4 cut(s)	283, 429, 486, 753
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	124, 591, 652
CseI	GACGC	1 cut(s)	690
CviAII	CATG	5 cut(s)	86, 95, 230, 271, 282
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	4 cut(s)	194, 315, 435, 604
DpnII	GATC	4 cut(s)	192, 313, 433, 602
Eam1104I	CTCTTC	2 cut(s)	624, 678
EarI	CTCTTC	2 cut(s)	624, 678
EciI	GGCGGA	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	393, 781
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	5 cut(s)	89, 98, 233, 274, 285
FatI	CATG	5 cut(s)	85, 94, 229, 270, 281
Fnu4HI	GCNGC	7 cut(s)	15, 18, 279, 286, 636, 696, 699
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	7 cut(s)	15, 18, 279, 286, 636, 696, 699
FspBI	CTAG	2 cut(s)	21, 128
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	7 cut(s)	15, 18, 279, 286, 636, 696, 699
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	593, 654
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	5 cut(s)	89, 98, 233, 274, 285
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	2 cut(s)	566, 618
HphI	GGTGA	2 cut(s)	259, 721
Hpy188I	TCNGA	6 cut(s)	138, 236, 309, 318, 523, 538
Hpy188III	TCNNGA	2 cut(s)	449, 458
HpyAV	CCTTC	2 cut(s)	268, 735
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	794
HpyCH4V	TGCA	7 cut(s)	14, 174, 183, 281, 288, 407, 472
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 95, 180, 404, 490
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	794
Hsp92II	CATG	5 cut(s)	89, 98, 233, 274, 285
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	192, 313, 433, 602
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	6 cut(s)	4, 26, 265, 272, 622, 685
LweI	GCATC	2 cut(s)	144, 373
MaeI	CTAG	2 cut(s)	21, 128
MaeII	ACGT	1 cut(s)	794
MaeIII	GTNAC	2 cut(s)	35, 702
MalI	GATC	4 cut(s)	194, 315, 435, 604
MboI	GATC	4 cut(s)	192, 313, 433, 602
MboII	GAAGA	6 cut(s)	331, 425, 490, 641, 695, 762
MflI	RGATCY	3 cut(s)	313, 433, 602
MhlI	GDGCHC	2 cut(s)	71, 352
MluCI	AATT	6 cut(s)	119, 184, 297, 322, 516, 555
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	2 cut(s)	214, 546
MnlI	CCTC	9 cut(s)	286, 358, 373, 413, 522, 582, 625, 665, 679
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	4 cut(s)	509, 552, 576, 762
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	17, 698
MspR9I	CCNGG	2 cut(s)	395, 783
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	395, 783
MwoI	GCNNNNNNNGC	5 cut(s)	23, 95, 180, 404, 490
NdeII	GATC	4 cut(s)	192, 313, 433, 602
NlaIII	CATG	5 cut(s)	89, 98, 233, 274, 285
NlaIV	GGNNCC	2 cut(s)	56, 435
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	702
NspI	RCATGY	2 cut(s)	98, 285
PaeI	GCATGC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	7 cut(s)	16, 19, 280, 287, 637, 697, 700
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PshBI	ATTAAT	1 cut(s)	762
PsiI	TTATAA	2 cut(s)	143, 162
Psp6I	CCWGG	2 cut(s)	393, 781
PspGI	CCWGG	2 cut(s)	393, 781
PspN4I	GGNNCC	2 cut(s)	56, 435
PspPI	GGNCC	3 cut(s)	124, 591, 652
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	3 cut(s)	313, 433, 602
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	509, 552, 576, 762
SatI	GCNGC	7 cut(s)	15, 18, 279, 286, 636, 696, 699
Sau3AI	GATC	4 cut(s)	192, 313, 433, 602
Sau96I	GGNCC	3 cut(s)	124, 591, 652
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	2 cut(s)	395, 783
SduI	GDGCHC	2 cut(s)	71, 352
SetI	ASST	9 cut(s)	19, 28, 129, 133, 149, 266, 424, 757, 797
SfaNI	GCATC	2 cut(s)	144, 373
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	6 cut(s)	119, 184, 297, 322, 516, 555
SsiI	CCGC	3 cut(s)	386, 431, 696
SspMI	CTAG	2 cut(s)	21, 128
StyD4I	CCNGG	2 cut(s)	393, 781
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	797
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	6 cut(s)	119, 184, 297, 322, 516, 555
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	4 cut(s)	509, 552, 576, 762
Tru9I	TTAA	4 cut(s)	509, 552, 576, 762
TscAI	CASTG	2 cut(s)	181, 697
TseFI	GTSAC	1 cut(s)	702
TseI	GCWGC	6 cut(s)	14, 17, 278, 285, 635, 698
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	2 cut(s)	287, 426
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	181, 697
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	2 cut(s)	516, 555
XceI	RCATGY	2 cut(s)	98, 285
XmaJI	CCTAGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	21, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.