Prupe.1G358000_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021849
Physical Location & Seq
Forward (+)
33126122 .. 33131599
5478 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G358000.1

Sequence Viewer

Length: 1191 bp
ATGGGGGTGGATTGGACCCAACTCCCACCAGAACTGGTAGAATCAATCGCGAAAAAGCTCACAATTTACGCGGACTATCTCCGATTCCGAGTGGTGTGCCACAGCTGGCTAGCCTGTGTCCCCAAAACTCCGCAGCACCTCCCTCCTCAGCTCCCCTGGCTGATGCTCCCCCAATCCCAGCCCAACCAAACACACCGCGCCTTCTTCAACCTCTCCAACAGCAGAGTCCACTTCCTCCACCTTCCGGAAGCTTCTCATCGCAAGCGCCGTTGCGGCTCCTCTCACGGCTGGCTCGTCATCCTCCACGAAACCCCCACCGTCCTTCTCGTTAACCCTCTCACACGTGCCAAGCGCCACCTCCCTCCACTCTCCGCCTTCCCCAACGTTGTTCGCTTCGACTATTCCGAAGTCGGCCGCGAGTACGCGCTCCAATCCTCGTCCGGAGATGTCTACACGCGCAGCTTGGCCCAAATGCGCGATTCATTTCTGAAAAAGGTCGTCCTCTCTTCGAGTCCTCTGGAAGCTAGCGGTTTTACTGCCCTAGCGATTCTCAGTCAAACCGGTGACTTGGCGTATTGCAGAGACGGAGACCAGTCTTGGACTTTCATCGACGGCGCCCGATCTTTCTCCGAGGACGTCATATCCGTGAACGGGTTGTTTTACGCCGTGGACAGTAAGGGTGTGGTCGCGGTGTGTGACGTTGAGGGTCCGTCAGCCCCTAGGGTTGCGATTATCCCAACGCCGAGGCTAGATGATGCCGCCGATATGCGATATTTGGTGAATTTGGGGGCCGATCTGCTGCTGGTGAGTCGGTATTTGGAGATTGAACGGTGGGATAATACAAATGTGAATTACAGAACGACGGGATTTGTCGTTTTCAGGATGAATTGGGCAGGGGCGAGGTGGGAGAAGGTTGAGAACTTGGGCGAGAGGATGGTCTTTATCGGCGAAAACTCGTCGTTTTCATTGTCTGCGTCTGATTTTCCGGGAAGTGTGGGAAATTGCATTTATTTCACAGACGATTACTCGGAATCCAACTATGAGAGCGGACTTGGGGGATACGATTCGGGGATTTTCAGAATATGGGATGGAACAATTCAAGAATTGCCTCCTTATCCCAGGAATTCGAATTATGAGGTGCATTGGCCTCCCGGCTCTCTACCGCTTTGGGTTATTCCTAATCCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

397

Amino Acids

44.54

Weight (kDa)

5.94

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021849)

Species Orthologous Gene IDs
malus_domestica MD08G1006100.v1.1 MD15G1005500.v1.1
prunus_persica Prupe.1G358000_v2.0.a1
pyrus_communis pycom08g00470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 1047
AccI GTMKAC 1 cut(s) 450
AccII CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
AccIII TCCGGA 2 cut(s) 244, 440
AclI AACGTT 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 781, 1123
AcvI CACGTG 1 cut(s) 344
AcyI GRCGYC 2 cut(s) 615, 636
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 244, 651
AflIII ACRYGT 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 560
AgsI TTSAA 3 cut(s) 208, 827, 1100
AjnI CCWGG 2 cut(s) 155, 1118
AluBI AGCT 6 cut(s) 58, 105, 151, 251, 462, 524
AluI AGCT 6 cut(s) 58, 105, 151, 251, 462, 524
Alw26I GTCTC 2 cut(s) 576, 582
Aor13HI TCCGGA 2 cut(s) 244, 440
AoxI GGCC 4 cut(s) 412, 465, 789, 1145
ApeKI GCWGC 3 cut(s) 133, 459, 799
ApoI RAATTY 2 cut(s) 781, 1123
AsiGI ACCGGT 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 719
AspLEI GCGC 7 cut(s) 200, 267, 354, 427, 459, 477, 617
AspS9I GGNCC 4 cut(s) 15, 466, 707, 789
AsuC2I CCSGG 2 cut(s) 987, 1152
AsuHPI GGTGA 3 cut(s) 575, 790, 817
AsuII TTCGAA 1 cut(s) 1127
AsuNHI GCTAGC 2 cut(s) 109, 524
AvaII GGWCC 2 cut(s) 15, 707
AvrII CCTAGG 1 cut(s) 719
BanI GGYRCC 1 cut(s) 614
BbrPI CACGTG 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 145, 471, 786
BccI CCATC 2 cut(s) 928, 1082
BceAI ACGGC 4 cut(s) 252, 301, 628, 650
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 2 cut(s) 157, 1120
BciVI GTATCC 1 cut(s) 1052
BcnI CCSGG 2 cut(s) 987, 1152
BcoDI GTCTC 2 cut(s) 576, 582
BfaI CTAG 5 cut(s) 110, 525, 542, 720, 749
BfoI RGCGCY 3 cut(s) 268, 355, 618
BfuI GTATCC 1 cut(s) 1052
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 6 cut(s) 134, 274, 415, 460, 759, 800
BlnI CCTAGG 1 cut(s) 719
BlsI GCNGC 6 cut(s) 135, 275, 416, 461, 760, 801
Bme1390I CCNGG 4 cut(s) 157, 987, 1120, 1152
Bme18I GGWCC 2 cut(s) 15, 707
BmgT120I GGNCC 4 cut(s) 15, 466, 707, 789
BmiI GGNNCC 5 cut(s) 17, 277, 616, 708, 790
BmrFI CCNGG 4 cut(s) 157, 987, 1120, 1152
BmsI GCATC 2 cut(s) 153, 745
BmtI GCTAGC 2 cut(s) 113, 528
Bpu10I CCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 987, 1152
BsaAI YACGTR 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 615, 636
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 6 cut(s) 155, 630, 666, 719, 743, 1118
BsaWI WCCGGW 3 cut(s) 244, 440, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 651
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 39, 592
BseAI TCCGGA 2 cut(s) 244, 440
BseBI CCWGG 2 cut(s) 157, 1120
BseDI CCNNGG 6 cut(s) 155, 630, 666, 719, 743, 1118
BseGI GGATG 4 cut(s) 297, 888, 939, 1093
BseLI CCNNNNNNNGG 2 cut(s) 244, 651
BseMII CTCAG 2 cut(s) 161, 565
BseNI ACTGG 2 cut(s) 39, 592
BseRI GAGGAG 2 cut(s) 135, 268
BseX3I CGGCCG 1 cut(s) 412
BseXI GCAGC 3 cut(s) 145, 471, 786
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 4 cut(s) 414, 467, 791, 1147
BshNI GGYRCC 1 cut(s) 614
BshTI ACCGGT 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 415
BsiSI CCGG 5 cut(s) 245, 441, 561, 986, 1152
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 244, 651
BsmAI GTCTC 2 cut(s) 576, 582
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 4 cut(s) 414, 467, 791, 1147
Bso31I GGTCTC 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 1127
Bsp13I TCCGGA 2 cut(s) 244, 440
Bsp143I GATC 2 cut(s) 620, 793
Bsp68I TCGCGA 1 cut(s) 50
BspANI GGCC 4 cut(s) 414, 467, 791, 1147
BspCNI CTCAG 2 cut(s) 160, 564
BspEI TCCGGA 2 cut(s) 244, 440
BspFNI CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
BspLI GGNNCC 5 cut(s) 17, 277, 616, 708, 790
BspOI GCTAGC 2 cut(s) 113, 528
BspT104I TTCGAA 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 582
BsrBI CCGCTC 1 cut(s) 1047
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 2 cut(s) 39, 592
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 6 cut(s) 155, 630, 666, 719, 743, 1118
BssMI GATC 2 cut(s) 620, 793
BssNI GRCGYC 2 cut(s) 615, 636
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 2 cut(s) 157, 1120
Bst4CI ACNGT 3 cut(s) 319, 674, 831
Bst6I CTCTTC 1 cut(s) 511
BstACI GRCGYC 2 cut(s) 615, 636
BstBAI YACGTR 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 1127
BstC8I GCNNGC 5 cut(s) 107, 111, 263, 290, 526
BstDEI CTNAG 2 cut(s) 147, 551
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 4 cut(s) 297, 888, 939, 1093
BstFNI CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
BstH2I RGCGCY 3 cut(s) 268, 355, 618
BstHHI GCGC 7 cut(s) 200, 267, 354, 427, 459, 477, 617
BstKTI GATC 2 cut(s) 623, 796
BstMAI GTCTC 2 cut(s) 576, 582
BstMBI GATC 2 cut(s) 620, 793
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 157, 273
BstNI CCWGG 2 cut(s) 157, 1120
BstSCI CCNGG 4 cut(s) 155, 985, 1118, 1150
BstUI CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
BstV1I GCAGC 3 cut(s) 145, 471, 786
BstZI CGGCCG 1 cut(s) 412
BsuI GTATCC 1 cut(s) 1052
BsuRI GGCC 4 cut(s) 414, 467, 791, 1147
BtgI CCRYGG 1 cut(s) 666
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 4 cut(s) 297, 888, 939, 1093
BtuMI TCGCGA 1 cut(s) 50
Cac8I GCNNGC 5 cut(s) 107, 111, 263, 290, 526
CfoI GCGC 7 cut(s) 200, 267, 354, 427, 459, 477, 617
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 4 cut(s) 15, 466, 707, 789
CseI GACGC 1 cut(s) 963
Csp6I GTAC 1 cut(s) 421
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 1 cut(s) 1185
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 147, 551
DinI GGCGCC 1 cut(s) 616
DpnI GATC 2 cut(s) 622, 795
DpnII GATC 2 cut(s) 620, 793
EaeI YGGCCR 1 cut(s) 412
EagI CGGCCG 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
EciI GGCGGA 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 15, 707
Eco52I CGGCCG 1 cut(s) 412
Eco72I CACGTG 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 1123
EcoRII CCWGG 2 cut(s) 155, 1118
EcoT14I CCWWGG 1 cut(s) 719
EgeI GGCGCC 1 cut(s) 616
EheI GGCGCC 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 719
Esp3I CGTCTC 1 cut(s) 576
FaeI CATG 1 cut(s) 1188
FaiI YATR 6 cut(s) 641, 767, 1041, 1084, 1134, 1186
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 1184
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 6 cut(s) 134, 274, 415, 460, 759, 800
FokI GGATG 4 cut(s) 284, 895, 946, 1100
Fsp4HI GCNGC 6 cut(s) 134, 274, 415, 460, 759, 800
FspBI CTAG 5 cut(s) 110, 525, 542, 720, 749
GlaI GCGC 7 cut(s) 199, 266, 353, 426, 458, 476, 616
GluI GCNGC 6 cut(s) 134, 274, 415, 460, 759, 800
GsaI CCCAGC 1 cut(s) 181
HaeII RGCGCY 3 cut(s) 268, 355, 618
HaeIII GGCC 4 cut(s) 414, 467, 791, 1147
HapII CCGG 5 cut(s) 245, 441, 561, 986, 1152
HgaI GACGC 1 cut(s) 963
HhaI GCGC 7 cut(s) 200, 267, 354, 427, 459, 477, 617
Hin1I GRCGYC 2 cut(s) 615, 636
Hin1II CATG 1 cut(s) 1188
Hin6I GCGC 7 cut(s) 198, 265, 352, 425, 457, 475, 615
HinP1I GCGC 7 cut(s) 198, 265, 352, 425, 457, 475, 615
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 9 cut(s) 41, 84, 225, 479, 511, 547, 808, 1031, 1064
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 5 cut(s) 245, 441, 561, 986, 1152
HphI GGTGA 3 cut(s) 575, 790, 817
Hpy166II GTNNAC 5 cut(s) 229, 331, 451, 649, 670
Hpy188I TCNGA 8 cut(s) 83, 89, 406, 489, 631, 979, 1030, 1079
Hpy188III TCNNGA 6 cut(s) 49, 245, 441, 518, 880, 1100
Hpy8I GTNNAC 5 cut(s) 229, 331, 451, 649, 670
Hpy99I CGWCG 3 cut(s) 614, 865, 961
HpyAV CCTTC 5 cut(s) 211, 251, 332, 385, 904
HpyCH4III ACNGT 3 cut(s) 319, 674, 831
HpyCH4IV ACGT 4 cut(s) 343, 384, 636, 699
HpyCH4V TGCA 3 cut(s) 579, 1005, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 273
HpyF3I CTNAG 2 cut(s) 147, 551
HpySE526I ACGT 4 cut(s) 343, 384, 636, 699
Hsp92I GRCGYC 2 cut(s) 615, 636
Hsp92II CATG 1 cut(s) 1188
HspAI GCGC 7 cut(s) 198, 265, 352, 425, 457, 475, 615
KasI GGCGCC 1 cut(s) 614
Kpn2I TCCGGA 2 cut(s) 244, 440
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 620, 793
LmnI GCTCC 4 cut(s) 156, 171, 281, 432
Lsp1109I GCAGC 3 cut(s) 145, 471, 786
LweI GCATC 2 cut(s) 153, 745
MaeI CTAG 5 cut(s) 110, 525, 542, 720, 749
MaeII ACGT 4 cut(s) 343, 384, 636, 699
MaeIII GTNAC 2 cut(s) 563, 695
MalI GATC 2 cut(s) 622, 795
MbiI CCGCTC 1 cut(s) 1047
MboI GATC 2 cut(s) 620, 793
MboII GAAGA 2 cut(s) 196, 498
MluCI AATT 9 cut(s) 63, 781, 850, 886, 1000, 1095, 1103, 1123, 1129
Mly113I GGCGCC 1 cut(s) 615
MlyI GAGTC 3 cut(s) 234, 520, 817
MmeI TCCRAC 2 cut(s) 240, 1059
MroI TCCGGA 2 cut(s) 244, 440
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 5 cut(s) 245, 441, 561, 986, 1152
MspR9I CCNGG 4 cut(s) 157, 987, 1120, 1152
MvaI CCWGG 2 cut(s) 157, 1120
MvnI CGCG 8 cut(s) 50, 71, 198, 417, 425, 457, 477, 689
MwoI GCNNNNNNNGC 2 cut(s) 157, 273
NarI GGCGCC 1 cut(s) 615
NciI CCSGG 2 cut(s) 987, 1152
NdeII GATC 2 cut(s) 620, 793
NheI GCTAGC 2 cut(s) 109, 524
NlaIII CATG 1 cut(s) 1188
NlaIV GGNNCC 5 cut(s) 17, 277, 616, 708, 790
NmeAIII GCCGAG 1 cut(s) 768
NmuCI GTSAC 2 cut(s) 563, 695
NruI TCGCGA 1 cut(s) 50
NspV TTCGAA 1 cut(s) 1127
PcsI WCGNNNNNNNCGW 4 cut(s) 265, 291, 402, 642
PfeI GAWTC 6 cut(s) 41, 84, 479, 547, 1031, 1064
PfoI TCCNGGA 1 cut(s) 985
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 6 cut(s) 135, 275, 416, 461, 760, 801
PleI GAGTC 3 cut(s) 233, 519, 816
PluTI GGCGCC 1 cut(s) 618
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
PpsI GAGTC 3 cut(s) 233, 519, 816
Ppu21I YACGTR 1 cut(s) 344
Psp1406I AACGTT 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 155, 1118
PspCI CACGTG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 2 cut(s) 155, 1118
PspN4I GGNNCC 5 cut(s) 17, 277, 616, 708, 790
PspPI GGNCC 4 cut(s) 15, 466, 707, 789
PvuII CAGCTG 1 cut(s) 105
RruI TCGCGA 1 cut(s) 50
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 6 cut(s) 134, 274, 415, 460, 759, 800
Sau3AI GATC 2 cut(s) 620, 793
Sau96I GGNCC 4 cut(s) 15, 466, 707, 789
SchI GAGTC 3 cut(s) 234, 520, 817
ScrFI CCNGG 4 cut(s) 157, 987, 1120, 1152
SfaNI GCATC 2 cut(s) 153, 745
SfoI GGCGCC 1 cut(s) 616
SfuI TTCGAA 1 cut(s) 1127
SinI GGWCC 2 cut(s) 15, 707
SmiMI CAYNNNNRTG 1 cut(s) 644
Sse9I AATT 9 cut(s) 63, 781, 850, 886, 1000, 1095, 1103, 1123, 1129
SspDI GGCGCC 1 cut(s) 614
SspMI CTAG 5 cut(s) 110, 525, 542, 720, 749
StyD4I CCNGG 4 cut(s) 155, 985, 1118, 1150
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 3 cut(s) 319, 674, 831
TaiI ACGT 4 cut(s) 346, 387, 639, 702
TaqI TCGA 4 cut(s) 396, 509, 609, 1127
TasI AATT 9 cut(s) 63, 781, 850, 886, 1000, 1095, 1103, 1123, 1129
TauI GCSGC 3 cut(s) 276, 417, 761
TfiI GAWTC 6 cut(s) 41, 84, 479, 547, 1031, 1064
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 2 cut(s) 563, 695
TseI GCWGC 3 cut(s) 133, 459, 799
Tsp45I GTSAC 2 cut(s) 563, 695
TspDTI ATGAA 4 cut(s) 471, 595, 899, 954
TspGWI ACGGA 3 cut(s) 600, 634, 699
VpaK11BI GGWCC 2 cut(s) 15, 707
XapI RAATTY 2 cut(s) 781, 1123
XmaJI CCTAGG 1 cut(s) 719
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 5 cut(s) 110, 525, 542, 720, 749
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.