Prupe.1G476000_v2.0.a1

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022448
Physical Location & Seq
Reverse (-)
39673286 .. 39675333
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476000.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 630 bp
ATGACCGTCAAATTCATCGAGCATCTCAGTGCTGGGATTTCGGTAGATAAAGTTGACCCTTTGAAGATCAAATATTACCGGCTGAGGCTTGCAATTGAGGGGTATACGAGCACCATCCTGCGTAAGAATGGTCAATTATCTGAATTGATCGGTGAACTTCAGCCTTTGTTCAATGGAACCGGAGAACAATCAGAAGGTGACTTTTATGCGATCGCATCACAGGTGCGCCGACTGGCAGCTGAGGTCCGACAACTAGACTCGTCACTACAGAGAGCCGTCCTGAAGGGGAATGACAGCCAAATTCCAAGTTGTAAAACGATTAATTCCTTACACGTATGTTTGACATCACTAATAATGCCAACAGCTACCTTGGGGGCATTGGGTTATGGTTACATGTGGTGGAAGGGTCTAAAATTCTCAGATCTTCTGTATGTGACAAAGCGTAGTATGAATGCTGCTGTTTCAAAATTGCATAAACGTCTGGAGAGCGTGACAGAGGCTATTGCTAACACAAAGAAGCACCTGACACAGAGAGTCCAGAATTTGGACGATAAATTGCTAGAGCAGAAATATATCGAAAAGTCGATTGTGGACAATGTATGTCATTTTCTGCATATCATGAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

210

Amino Acids

23.58

Weight (kDa)

9.28

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022448)

Species Orthologous Gene IDs
prunus_persica Prupe.1G476000_v2.0.a1 Prupe.2G092400_v2.0.a1 Prupe.3G110800_v2.0.a1 Prupe.4G273100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 1 cut(s) 104
AcsI RAATTY 4 cut(s) 11, 300, 413, 541
AcuI CTGAAG 2 cut(s) 143, 302
AfiI CCNNNNNNNGG 1 cut(s) 544
AflIII ACRYGT 2 cut(s) 331, 393
AgsI TTSAA 3 cut(s) 64, 172, 465
AluBI AGCT 3 cut(s) 239, 365, 624
AluI AGCT 3 cut(s) 239, 365, 624
Alw21I GWGCWC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 236, 455
ApoI RAATTY 4 cut(s) 11, 300, 413, 541
AseI ATTAAT 1 cut(s) 321
AsiSI GCGATCGC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 164, 209
AvaII GGWCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 113
BbvCI CCTCAGC 2 cut(s) 83, 240
BbvI GCAGC 2 cut(s) 248, 442
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 260
BfaI CTAG 2 cut(s) 254, 560
BfmI CTRYAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 421
BisI GCNGC 2 cut(s) 237, 456
BlsI GCNGC 2 cut(s) 238, 457
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 2 cut(s) 31, 224
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 2 cut(s) 83, 240
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMII CTCAG 4 cut(s) 40, 74, 231, 432
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 248, 442
BseYI CCCAGC 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 2 cut(s) 79, 180
BslI CCNNNNNNNGG 1 cut(s) 544
BsmI GAATGC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 66, 147, 210, 421
BspCNI CTCAG 4 cut(s) 39, 75, 232, 431
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 66, 147, 210, 421
BssNAI GTATAC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 369
Bst1107I GTATAC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 7
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 26, 83, 240, 418
BstF5I GGATG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 69, 150, 213, 424
BstMBI GATC 4 cut(s) 66, 147, 210, 421
BstMCI CGRYCG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 248, 442
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BstZ17I GTATAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 90
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 2 cut(s) 394, 619
CviJI RGCY 9 cut(s) 82, 88, 163, 239, 275, 297, 365, 500, 624
CviKI_1 RGCY 9 cut(s) 82, 88, 163, 239, 275, 297, 365, 500, 624
DdeI CTNAG 4 cut(s) 26, 83, 240, 418
DpnI GATC 4 cut(s) 68, 149, 212, 423
DpnII GATC 4 cut(s) 66, 147, 210, 421
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 143, 302
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 397, 622
FatI CATG 2 cut(s) 393, 618
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 237, 456
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 237, 456
FspBI CTAG 2 cut(s) 254, 560
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 237, 456
GsaI CCCAGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 503
HapII CCGG 2 cut(s) 79, 180
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 397, 622
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 2 cut(s) 257, 534
HpaII CCGG 2 cut(s) 79, 180
HphI GGTGA 2 cut(s) 164, 209
Hpy166II GTNNAC 4 cut(s) 55, 105, 155, 592
Hpy188I TCNGA 4 cut(s) 142, 193, 248, 421
Hpy188III TCNNGA 4 cut(s) 280, 482, 538, 619
Hpy8I GTNNAC 4 cut(s) 55, 105, 155, 592
HpyAV CCTTC 3 cut(s) 188, 277, 397
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 333, 478
HpyCH4V TGCA 3 cut(s) 92, 472, 613
HpyF3I CTNAG 4 cut(s) 26, 83, 240, 418
HpySE526I ACGT 2 cut(s) 333, 478
Hsp92II CATG 2 cut(s) 397, 622
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 66, 147, 210, 421
Lsp1109I GCAGC 2 cut(s) 248, 442
LweI GCATC 2 cut(s) 31, 224
MaeI CTAG 2 cut(s) 254, 560
MaeII ACGT 2 cut(s) 333, 478
MaeIII GTNAC 5 cut(s) 197, 261, 389, 433, 490
MalI GATC 4 cut(s) 68, 149, 212, 423
MboI GATC 4 cut(s) 66, 147, 210, 421
MboII GAAGA 2 cut(s) 76, 416
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 113
MlyI GAGTC 2 cut(s) 251, 543
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 4 cut(s) 78, 91, 235, 490
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 79, 180
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 457
NdeII GATC 4 cut(s) 66, 147, 210, 421
NlaIII CATG 2 cut(s) 397, 622
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 4 cut(s) 197, 261, 433, 490
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 618
PciI ACATGT 1 cut(s) 393
PctI GAATGC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 2 cut(s) 238, 457
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 2 cut(s) 251, 542
PpsI GAGTC 2 cut(s) 251, 542
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 421
PvuI CGATCG 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 239
RgaI GCGATCGC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 237, 456
Sau3AI GATC 4 cut(s) 66, 147, 210, 421
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 251, 543
SduI GDGCHC 1 cut(s) 113
SfaAI GCGATCGC 1 cut(s) 213
SfaNI GCATC 2 cut(s) 31, 224
SfcI CTRYAG 1 cut(s) 266
SgfI GCGATCGC 1 cut(s) 213
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 27
SspI AATATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 254, 560
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 336, 481
TaqI TCGA 3 cut(s) 18, 576, 584
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 4 cut(s) 197, 261, 433, 490
TseI GCWGC 2 cut(s) 236, 455
Tsp45I GTSAC 4 cut(s) 197, 261, 433, 490
TspDTI ATGAA 2 cut(s) 4, 464
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 244
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 4 cut(s) 11, 300, 413, 541
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 2 cut(s) 254, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.