Prupe.3G110800_v2.0.a1

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022448
Physical Location & Seq
Reverse (-)
9162613 .. 9164180
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G110800.1

Sequence Viewer

Length: 591 bp
ATGGATGCTTTTGTAGCCATTGTTCACATTTTGTCTCTGTGTGATTGTTCTCTTTCTACAGGGTATGCTAGCACCATCCTGCGTAAGAATGGTCAATTATCTGAATTGATCAGTGAACTTCAGCCTTTGTTCAATGGAACCGGAGAACAATCAGAAGGTGACTTTTATGCGATCGCATCACAGGTGCGCCGACTGGCAGCTGTGGTCCGGCAACTAGACTCGTCACTACAGAGAGCCGTCCTGAAGGGGAATGATAGCCAAATTGCAAGTTGTAAAACGATTAATTCCTTACACGTATGTTTGACATCACTAATAATGCCAACAGCTACCTTGGGGGCATTGGGTTATGGTTACATGTGGTGGAAGGGTCTAAAATTCTCAGATCTTGTGTATGTGACAAAGCGTAGTATGAATGCTGCTGTTTCAAAATTGCATAAACGTCTGGAGAGCGTGACAGAGGCTATTGCTAACACAAAGAAGCACCTGACACAGAGAGTCCAGAATTTGGACGATAAATTGCTAGAGCATAAATATATCGAAAAGTCGATTGTGGACAATGTATGTCATTTTCTGCATATCATGAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

197

Amino Acids

21.81

Weight (kDa)

8.79

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022448)

Species Orthologous Gene IDs
prunus_persica Prupe.1G476000_v2.0.a1 Prupe.2G092400_v2.0.a1 Prupe.3G110800_v2.0.a1 Prupe.4G273100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 505
AcsI RAATTY 2 cut(s) 374, 502
AcuI CTGAAG 2 cut(s) 104, 263
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 2 cut(s) 292, 354
AgsI TTSAA 2 cut(s) 133, 426
AluBI AGCT 3 cut(s) 200, 326, 585
AluI AGCT 3 cut(s) 200, 326, 585
Alw26I GTCTC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 197, 416
ApoI RAATTY 2 cut(s) 374, 502
AseI ATTAAT 1 cut(s) 282
AsiSI GCGATCGC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 170
AsuNHI GCTAGC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 209, 403
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 221
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 3 cut(s) 69, 215, 521
BfmI CTRYAG 2 cut(s) 57, 227
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 198, 417
BlsI GCNGC 2 cut(s) 199, 418
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 185
BmtI GCTAGC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 10, 75
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 209, 403
Bsh1285I CGRYCG 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 2 cut(s) 141, 208
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 418
Bsp143I GATC 3 cut(s) 108, 171, 382
BspCNI CTCAG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 3 cut(s) 108, 171, 382
BssT1I CCWWGG 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 10, 75
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 111, 174, 385
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 108, 171, 382
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 57, 227
BstV1I GCAGC 2 cut(s) 209, 403
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BtsCI GGATG 2 cut(s) 10, 75
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 70
CciI TCATGA 1 cut(s) 579
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 2 cut(s) 355, 580
CviJI RGCY 8 cut(s) 17, 124, 200, 236, 258, 326, 461, 585
CviKI_1 RGCY 8 cut(s) 17, 124, 200, 236, 258, 326, 461, 585
DdeI CTNAG 1 cut(s) 379
DpnI GATC 3 cut(s) 110, 173, 384
DpnII GATC 3 cut(s) 108, 171, 382
Eco130I CCWWGG 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 104, 263
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 358, 583
FatI CATG 2 cut(s) 354, 579
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 198, 417
FokI GGATG 2 cut(s) 17, 62
Fsp4HI GCNGC 2 cut(s) 198, 417
FspBI CTAG 3 cut(s) 69, 215, 521
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 198, 417
GsuI CTGGAG 1 cut(s) 464
HapII CCGG 2 cut(s) 141, 208
HhaI GCGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 358, 583
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 218, 495
HpaII CCGG 2 cut(s) 141, 208
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 3 cut(s) 25, 116, 553
Hpy188I TCNGA 3 cut(s) 103, 154, 382
Hpy188III TCNNGA 4 cut(s) 241, 443, 499, 580
Hpy8I GTNNAC 3 cut(s) 25, 116, 553
HpyAV CCTTC 3 cut(s) 149, 238, 358
HpyCH4IV ACGT 2 cut(s) 294, 439
HpyCH4V TGCA 3 cut(s) 266, 433, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 379
HpySE526I ACGT 2 cut(s) 294, 439
Hsp92II CATG 2 cut(s) 358, 583
HspAI GCGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 108, 171, 382
Lsp1109I GCAGC 2 cut(s) 209, 403
LweI GCATC 1 cut(s) 185
MaeI CTAG 3 cut(s) 69, 215, 521
MaeII ACGT 2 cut(s) 294, 439
MaeIII GTNAC 5 cut(s) 158, 222, 350, 394, 451
MalI GATC 3 cut(s) 110, 173, 384
MboI GATC 3 cut(s) 108, 171, 382
MflI RGATCY 1 cut(s) 382
MluCI AATT 8 cut(s) 95, 104, 261, 283, 374, 428, 502, 515
MlyI GAGTC 2 cut(s) 212, 504
MnlI CCTC 1 cut(s) 451
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 141, 208
Mva1269I GAATGC 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 108, 171, 382
NheI GCTAGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 358, 583
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 4 cut(s) 158, 222, 394, 451
NspI RCATGY 1 cut(s) 358
PagI TCATGA 1 cut(s) 579
PciI ACATGT 1 cut(s) 354
PctI GAATGC 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 2 cut(s) 199, 418
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 2 cut(s) 212, 503
PpsI GAGTC 2 cut(s) 212, 503
Ppu21I YACGTR 1 cut(s) 295
PscI ACATGT 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 205
PsrI GAACNNNNNNTAC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 382
PvuI CGATCG 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 200
RgaI GCGATCGC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 198, 417
Sau3AI GATC 3 cut(s) 108, 171, 382
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 212, 504
SetI ASST 9 cut(s) 160, 186, 202, 297, 328, 332, 442, 486, 587
SfaAI GCGATCGC 1 cut(s) 174
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 2 cut(s) 57, 227
SgfI GCGATCGC 1 cut(s) 174
SinI GGWCC 1 cut(s) 205
Sse9I AATT 8 cut(s) 95, 104, 261, 283, 374, 428, 502, 515
SspMI CTAG 3 cut(s) 69, 215, 521
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 2 cut(s) 297, 442
TaqI TCGA 2 cut(s) 537, 545
TasI AATT 8 cut(s) 95, 104, 261, 283, 374, 428, 502, 515
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 4 cut(s) 158, 222, 394, 451
TseI GCWGC 2 cut(s) 197, 416
Tsp45I GTSAC 4 cut(s) 158, 222, 394, 451
TspDTI ATGAA 1 cut(s) 425
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 2 cut(s) 374, 502
XceI RCATGY 1 cut(s) 358
XspI CTAG 3 cut(s) 69, 215, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.