Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0022448

Physical Location & Seq

Genomic Coordinates Reverse (-)

22559221 .. 22561063

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCAGGAACTCCTTTATATGAAGATGCAGACGTAGATGCTTTGCTGGGGTTGCTCTTTATGGATGCTTTTGTAGCCATTGTTCACATTTTGTCTCTGTGGTTTTGGGAATCTGTTACTGGACTTACTGAAGCATACAACTTTGTTAACATTTCTCCATTTAGGTATACTAACACCATCCTGCGTAAGAATGGTAAATTATCTGAATTGATCGGTGAACTTCAGGTACGCCGACTGGCAGCTGCGGTCCGGCAACTAGGCTCGTCACTACAGAGAGCCATCCTGAAGGGGAATGACAGCCAAATTCAAGGTTTGACATCACTAATAATGCCAACAGCTACCTTGGGGGCGTTGGGTTATGGTTACATGTGGTGGAAGGGTCTAAAATTCTCAGATCTTATGTATGTGACAAAGCGTAGTATGAATGCTGCTGTTTCAAAATTGCATAAACGGCTGGAGAGCAACACAAAGAAGCACCTGACACAGAGAGTCCAGAATTTGGACGATAAATTGCTAGAGCAGAAATATATCGAAAAGTCGATTCTGGACAATGTATGTCATTTTCTGCATATCATGAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

195

Amino Acids

22.03

Weight (kDa)

9.3

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022448)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G476000_v2.0.a1 Prupe.2G092400_v2.0.a1 Prupe.3G110800_v2.0.a1 Prupe.4G273100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	303, 386, 496
AcuI	CTGAAG	3 cut(s)	150, 206, 305
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	308, 438
AluBI	AGCT	3 cut(s)	242, 338, 579
AluI	AGCT	3 cut(s)	242, 338, 579
Alw26I	GTCTC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	239, 242, 428
ApoI	RAATTY	3 cut(s)	303, 386, 496
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	229, 251, 415
BccI	CCATC	2 cut(s)	185, 287
BceAI	ACGGC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	257, 515
BfmI	CTRYAG	1 cut(s)	269
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	240, 243, 429
BlsI	GCNGC	3 cut(s)	241, 244, 430
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmsI	GCATC	3 cut(s)	16, 28, 55
BpmI	CTGGAG	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	124, 240
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	70, 177, 279
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	124, 240
BseXI	GCAGC	3 cut(s)	229, 251, 415
BseYI	CCCAGC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	210, 394
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	124, 240
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	210, 394
BssNAI	GTATAC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	70, 177, 279
BstKTI	GATC	2 cut(s)	213, 397
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	210, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 74, 451
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	229, 251, 415
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	70, 177, 279
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	247
CpoI	CGGWCCG	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	227
CspI	CGGWCCG	1 cut(s)	247
CviAII	CATG	2 cut(s)	367, 574
CviJI	RGCY	8 cut(s)	77, 242, 261, 278, 300, 338, 454, 579
CviKI_1	RGCY	8 cut(s)	77, 242, 261, 278, 300, 338, 454, 579
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	2 cut(s)	212, 396
DpnII	GATC	2 cut(s)	210, 394
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	3 cut(s)	150, 206, 305
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	370, 577
FatI	CATG	2 cut(s)	366, 573
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	240, 243, 429
FokI	GGATG	3 cut(s)	77, 164, 266
Fsp4HI	GCNGC	3 cut(s)	240, 243, 429
FspBI	CTAG	2 cut(s)	257, 515
GluI	GCNGC	3 cut(s)	240, 243, 429
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	476
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	2 cut(s)	370, 577
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	110, 489, 541
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	4 cut(s)	85, 148, 168, 218
Hpy188I	TCNGA	2 cut(s)	205, 394
Hpy188III	TCNNGA	5 cut(s)	6, 283, 493, 545, 574
Hpy8I	GTNNAC	4 cut(s)	85, 148, 168, 218
HpyAV	CCTTC	2 cut(s)	280, 370
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	29, 445, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 74, 451
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	370, 577
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	210, 394
Lsp1109I	GCAGC	3 cut(s)	229, 251, 415
LweI	GCATC	3 cut(s)	16, 28, 55
MaeI	CTAG	2 cut(s)	257, 515
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	4 cut(s)	115, 264, 362, 406
MalI	GATC	2 cut(s)	212, 396
MboI	GATC	2 cut(s)	210, 394
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	7 cut(s)	197, 206, 303, 386, 440, 496, 509
MlyI	GAGTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	52, 74, 451
NdeII	GATC	2 cut(s)	210, 394
NlaIII	CATG	2 cut(s)	370, 577
NmuCI	GTSAC	2 cut(s)	264, 406
NspI	RCATGY	1 cut(s)	370
PagI	TCATGA	1 cut(s)	573
PciI	ACATGT	1 cut(s)	366
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	110, 541
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	241, 244, 430
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PscI	ACATGT	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	247
PsrI	GAACNNNNNNTAC	4 cut(s)	66, 98, 210, 242
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
Rsr2I	CGGWCCG	1 cut(s)	247
RsrII	CGGWCCG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	240, 243, 429
Sau3AI	GATC	2 cut(s)	210, 394
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	498
SetI	ASST	9 cut(s)	36, 167, 228, 244, 313, 340, 344, 480, 581
SfaNI	GCATC	3 cut(s)	16, 28, 55
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	7 cut(s)	197, 206, 303, 386, 440, 496, 509
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	257, 515
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	531, 539
TasI	AATT	7 cut(s)	197, 206, 303, 386, 440, 496, 509
TfiI	GAWTC	2 cut(s)	110, 541
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	2 cut(s)	264, 406
TseI	GCWGC	3 cut(s)	239, 242, 428
Tsp45I	GTSAC	2 cut(s)	264, 406
TspDTI	ATGAA	2 cut(s)	36, 437
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	3 cut(s)	303, 386, 496
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	2 cut(s)	257, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.