Prupe.1G478300_v2.0.a1

Domain of unknown function (DUF4666)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40036726 .. 40037538
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G478300.1

Sequence Viewer

Length: 279 bp
ATGGCGACGTTAGCAAGGTCGGCATCCACATTTAGGCGGCAAGGCTCGTCGGGCTTAATATGGGACGATAACTTGATGCTGCAAAGAGAGGAAGGCAGGGCAGAGTTTAGAGAGCTAAGGCCATGCCAGAGTGCCAAACCCATTGGCCTCAAGGCTTATAGCAGCTCAAATGGAGCACTCGCGATTTGCCCTCACAGCTCTTCTTCCTCTGCCAAGAAGAACCCGCATTCTCTCAAATCCAAATTCTTGAAAATGTTTCGAGCTCTTTTTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.25

Weight (kDa)

10.73

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019204)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29441
prunus_persica Prupe.1G478300_v2.0.a1
rosa_laevigata RLG00000011522
rosa_roxburghii Rroxscaffold_7G00169830
rosa_samantha Rh6AG390100 Rh6BG398500 Rh6CG404400 Rh6DG391100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 2 cut(s) 37, 224
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 4 cut(s) 115, 165, 198, 263
AluI AGCT 4 cut(s) 115, 165, 198, 263
Alw21I GWGCWC 2 cut(s) 178, 265
AoxI GGCC 2 cut(s) 119, 145
ApeKI GCWGC 2 cut(s) 79, 162
ApoI RAATTY 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 271
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 2 cut(s) 178, 265
BbvI GCAGC 2 cut(s) 66, 174
BisI GCNGC 3 cut(s) 38, 80, 163
BlsI GCNGC 3 cut(s) 39, 81, 164
BmsI GCATC 2 cut(s) 32, 66
Bpu10I CCTNAGC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 66, 174
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 121, 147
BsiHKAI GWGCWC 2 cut(s) 178, 265
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 121, 147
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 178, 265
Bsp68I TCGCGA 1 cut(s) 182
BspACI CCGC 2 cut(s) 37, 224
BspANI GGCC 2 cut(s) 121, 147
BspFNI CGCG 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 51, 195
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 66, 174
BsuRI GGCC 2 cut(s) 121, 147
BtsCI GGATG 1 cut(s) 23
BtuMI TCGCGA 1 cut(s) 182
CviAII CATG 1 cut(s) 123
CviJI RGCY 9 cut(s) 45, 54, 115, 121, 147, 155, 165, 198, 263
CviKI_1 RGCY 9 cut(s) 45, 54, 115, 121, 147, 155, 165, 198, 263
DdeI CTNAG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 1 cut(s) 126
FaiI YATR 3 cut(s) 61, 124, 159
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 122
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 38, 80, 163
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 38, 80, 163
GluI GCNGC 3 cut(s) 38, 80, 163
HaeIII GGCC 2 cut(s) 121, 147
Hin1II CATG 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 181, 247
Hpy99I CGWCG 2 cut(s) 10, 52
HpyAV CCTTC 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 51, 195
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 2 cut(s) 82, 140
Lsp1109I GCAGC 2 cut(s) 66, 174
LweI GCATC 2 cut(s) 32, 66
MaeII ACGT 1 cut(s) 8
MboII GAAGA 3 cut(s) 192, 195, 229
MhlI GDGCHC 2 cut(s) 178, 265
MluCI AATT 1 cut(s) 242
MnlI CCTC 4 cut(s) 82, 158, 201, 217
MseI TTAA 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 51, 195
NlaIII CATG 1 cut(s) 126
NruI TCGCGA 1 cut(s) 182
NspV TTCGAA 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 205
PctI GAATGC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 39, 81, 164
Psp124BI GAGCTC 1 cut(s) 265
RruI TCGCGA 1 cut(s) 182
SacI GAGCTC 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 38, 80, 163
SduI GDGCHC 2 cut(s) 178, 265
SetI ASST 6 cut(s) 11, 20, 117, 167, 200, 265
SfaNI GCATC 2 cut(s) 32, 66
SfuI TTCGAA 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 242
SsiI CCGC 2 cut(s) 37, 224
SstI GAGCTC 1 cut(s) 265
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 259, 271
TasI AATT 1 cut(s) 242
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseI GCWGC 2 cut(s) 79, 162
XapI RAATTY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.