Rh6AG390100

Domain of unknown function (DUF4666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019204
Physical Location & Seq
Reverse (-)
58860606 .. 58860911
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG390100.1

Sequence Viewer

Length: 306 bp
ATGGCTACATTACCAAGGTCAGTTACCTCGTTTAGGAGGCAAGGCTCTTCGGGGTTGGTATGGGATGAGGCATTACAAAAAGAGGTAGCCAGGACAGAGTTTAGAGAGCTAAGGCTCTGCCACAGTGCCAAACCCCTGGGTCTGGTTTATAGCAATTCAAATGTAGAACTCACCATCTGCACCCGCAATAATTCTACCCCAGCCAAAAAGAATAATTCTTTTAAAACCAAATTCATGAAGATGTTTCCAGCTGTTTTCAGAAAATGGGCAACCCGGAAATTCAACCGCGGAAAGGAGATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4666

Protein Analysis

101

Amino Acids

11.63

Weight (kDa)

10.79

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4666 PF15697 1 - 79 2.1e-12 Domain of unknown function (DUF4666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019204)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29441
prunus_persica Prupe.1G478300_v2.0.a1
rosa_laevigata RLG00000011522
rosa_roxburghii Rroxscaffold_7G00169830
rosa_samantha Rh6AG390100 Rh6BG398500 Rh6CG404400 Rh6DG391100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 184, 286, 288
AcsI RAATTY 2 cut(s) 230, 278
AfiI CCNNNNNNNGG 3 cut(s) 33, 142, 292
AgsI TTSAA 2 cut(s) 159, 283
AjnI CCWGG 2 cut(s) 89, 135
AluBI AGCT 2 cut(s) 109, 251
AluI AGCT 2 cut(s) 109, 251
ApoI RAATTY 2 cut(s) 230, 278
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 163
BccI CCATC 2 cut(s) 182, 292
BciT130I CCWGG 2 cut(s) 91, 137
BcnI CCSGG 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 91, 137, 274
BmrFI CCNGG 3 cut(s) 91, 137, 274
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 14, 135, 136, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 142, 292
BseBI CCWGG 2 cut(s) 91, 137
BseDI CCNNGG 4 cut(s) 14, 135, 136, 286
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 33, 142, 292
BseYI CCCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 288
BsiSI CCGG 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 33, 142, 292
BspACI CCGC 3 cut(s) 184, 286, 288
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 14, 135, 136, 286
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 2 cut(s) 91, 137
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 286
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 288
BstNI CCWGG 2 cut(s) 91, 137
BstSCI CCNGG 3 cut(s) 89, 135, 272
BstUI CGCG 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 130
CciI TCATGA 1 cut(s) 234
Cfr42I CCGCGG 1 cut(s) 289
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 5, 45, 89, 109, 115, 203, 251
CviKI_1 RGCY 7 cut(s) 5, 45, 89, 109, 115, 203, 251
DdeI CTNAG 1 cut(s) 110
DraI TTTAAA 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 14
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 89, 135
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 238
FaiI YATR 4 cut(s) 61, 150, 236, 304
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 191
FokI GGATG 1 cut(s) 77
GsaI CCCAGC 1 cut(s) 203
HapII CCGG 1 cut(s) 274
Hin1II CATG 1 cut(s) 238
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 238
KspI CCGCGG 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 52
LpnPI CCDG 8 cut(s) 76, 103, 122, 128, 149, 213, 261, 287
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 2 cut(s) 39, 250
MluCI AATT 5 cut(s) 154, 190, 214, 230, 278
MnlI CCTC 4 cut(s) 30, 37, 61, 76
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 251, 288
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 3 cut(s) 91, 137, 274
MvaI CCWGG 2 cut(s) 91, 137
MvnI CGCG 1 cut(s) 288
NciI CCSGG 1 cut(s) 274
NlaIII CATG 1 cut(s) 238
PagI TCATGA 1 cut(s) 234
PasI CCCWGGG 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 89, 135
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 89, 135
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 239
SacII CCGCGG 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 91, 137, 274
SetI ASST 5 cut(s) 20, 29, 87, 111, 253
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 5 cut(s) 154, 190, 214, 230, 278
SsiI CCGC 3 cut(s) 184, 286, 288
StyD4I CCNGG 3 cut(s) 89, 135, 272
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 125
TasI AATT 5 cut(s) 154, 190, 214, 230, 278
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 223, 251
TspRI CASTG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 31
XapI RAATTY 2 cut(s) 230, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.