Prupe.1G534500_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022481
Physical Location & Seq
Reverse (-)
43688540 .. 43690140
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G534500.1

Sequence Viewer

Length: 990 bp
ATGGGCAAAATGAAGGTTATTGATTCTGGGGTTGATGAGTTTCCTTCAAATTCTCTGAATCTTGAGTCTTATGAAGTTGATGTGAAACATTGGGAGGAAGATGTTGAGAAAAGGGCATCAGCATCTTCATCATCTCTGTCTTCCTTGGAGCTATTGGCTGATGTAGCAATCCAACAATCAATGGAGTTGCTTTTGGACGAAAAGACCGTTGTTGAAGAGTTGATCAACTTCTTTGCTCGAAAGAGAAGGGAACAAAGGGTTTTGGCAGGCAAGCTAGGGTTTGAGTTGAATAACATTTTCATTCCAAAGAAGAAAAGGAGCAGACTTGGCCCTCTTTCTCTTAAAAGGAAGGGAGAATATTCTGATGATCATAATTGTTTTGGGAGTGACAACCTTCTCCAAAATGACAACAACAACAATCTGAACCAGAAAAAGAAGAAGCAGAAAAGGGTTCATGTTCAAACTGAACAATTGGAGCCAAAACCAGAGTTGCCTCAAGAACTAAAACACATTATTAGTGGAATTGGTGGAGATGTGAAACTTGTAATCCAGAAGAAGATATGTGCGTCTGATATGTCTGCAAATAATGCTCGATTTTCGATACCAGGGATTAAGGGCAAAAGCGCAGACTTTCTTAAGGAAAAGGAGCAGAGTGATTTGGATATTCGTGACAGTGACAAGAAGAAGCGGCTGATTGGTATCCCTGTTTTGATGCTCAACCCATATGATCTGAGCTTCGATTCTTTACGCCTGAAGAAATGGCAAATGGGAGGCAACCATGTGTACAATCTGGTTTCGGGATGGAGAAAGGTTGCCAAGGCAAATAAACTCGAGGAAGATGAGATGGTGCAGCTTTGGTCATTCCGCCTCAACCATGACTCTCAGCTTTGCTTTGTGCTTGTCAAAGTTAATAGCACCACCACCACAAAGGAGGAAGCTCACCAACATATTGGATCAATTTCTTGTCCCAACAATGAGCAACTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

330

Amino Acids

37.43

Weight (kDa)

8.67

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022481)

Species Orthologous Gene IDs
prunus_persica Prupe.1G534500_v2.0.a1 Prupe.1G539700_v2.0.a1 Prupe.4G183800_v2.0.a1 Prupe.5G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 688, 865
AclWI GGATC 1 cut(s) 961
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 785
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 4 cut(s) 48, 215, 289, 461
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 6 cut(s) 151, 274, 735, 853, 886, 938
AluI AGCT 6 cut(s) 151, 274, 735, 853, 886, 938
AlwI GGATC 1 cut(s) 961
Ama87I CYCGRG 1 cut(s) 830
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 862
BccI CCATC 2 cut(s) 795, 838
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 2 cut(s) 222, 367
BfaI CTAG 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 2 cut(s) 689, 851
BlsI GCNGC 2 cut(s) 690, 852
Bme1390I CCNGG 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 606
BmsI GCATC 3 cut(s) 125, 131, 702
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 1 cut(s) 968
BpuEI CTTGAG 2 cut(s) 83, 480
BsaBI GATNNNNATC 1 cut(s) 698
BsaJI CCNNGG 3 cut(s) 144, 605, 816
Bse8I GATNNNNATC 1 cut(s) 698
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 144, 605, 816
BseGI GGATG 1 cut(s) 806
BseJI GATNNNNATC 1 cut(s) 698
BseMII CTCAG 2 cut(s) 722, 896
BseXI GCAGC 1 cut(s) 862
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 830
BslFI GGGAC 1 cut(s) 951
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 830
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 4 cut(s) 222, 367, 727, 953
BspACI CCGC 2 cut(s) 688, 865
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 723, 895
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 1 cut(s) 961
BspTI CTTAAG 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 783
BssECI CCNNGG 3 cut(s) 144, 605, 816
BssMI GATC 4 cut(s) 222, 367, 727, 953
BssT1I CCWWGG 2 cut(s) 144, 816
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 208, 674
Bst6I CTCTTC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 783
BstC8I GCNNGC 2 cut(s) 268, 272
BstDEI CTNAG 3 cut(s) 731, 882, 987
BstF5I GGATG 1 cut(s) 806
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 4 cut(s) 225, 370, 730, 956
BstMBI GATC 4 cut(s) 222, 367, 727, 953
BstMWI GCNNNNNNNGC 3 cut(s) 164, 327, 587
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 862
BstV2I GAAGAC 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 950
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 806
BtsIMutI CAGTG 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 268, 272
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 1 cut(s) 555
Csp6I GTAC 1 cut(s) 784
CviAII CATG 3 cut(s) 455, 779, 875
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 3 cut(s) 731, 882, 987
DpnI GATC 4 cut(s) 224, 369, 729, 955
DpnII GATC 4 cut(s) 222, 367, 727, 953
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 854
Eco130I CCWWGG 2 cut(s) 144, 816
Eco57I CTGAAG 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 144, 816
ErhI CCWWGG 2 cut(s) 144, 816
FaeI CATG 3 cut(s) 458, 782, 878
FaqI GGGAC 1 cut(s) 951
FatI CATG 3 cut(s) 454, 778, 874
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 2 cut(s) 222, 367
Fnu4HI GCNGC 2 cut(s) 689, 851
FokI GGATG 1 cut(s) 813
Fsp4HI GCNGC 2 cut(s) 689, 851
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 625
GluI GCNGC 2 cut(s) 689, 851
HaeIII GGCC 1 cut(s) 330
HgaI GACGC 1 cut(s) 555
HhaI GCGC 1 cut(s) 626
Hin1II CATG 3 cut(s) 458, 782, 878
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HinfI GANTC 5 cut(s) 23, 58, 65, 740, 878
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 5 cut(s) 57, 364, 423, 571, 732
Hpy188III TCNNGA 5 cut(s) 62, 497, 550, 668, 798
Hpy8I GTNNAC 1 cut(s) 784
HpyAV CCTTC 5 cut(s) 7, 54, 240, 343, 404
HpyCH4III ACNGT 2 cut(s) 208, 674
HpyCH4V TGCA 2 cut(s) 581, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 327, 587
HpyF3I CTNAG 3 cut(s) 731, 882, 987
Hsp92II CATG 3 cut(s) 458, 782, 878
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 2 cut(s) 222, 367
Kzo9I GATC 4 cut(s) 222, 367, 727, 953
LmnI GCTCC 4 cut(s) 148, 318, 475, 646
Lsp1109I GCAGC 1 cut(s) 862
LweI GCATC 3 cut(s) 125, 131, 702
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 386, 668, 674
MalI GATC 4 cut(s) 224, 369, 729, 955
MboI GATC 4 cut(s) 222, 367, 727, 953
MfeI CAATTG 1 cut(s) 470
MluCI AATT 5 cut(s) 49, 373, 470, 522, 957
MlyI GAGTC 2 cut(s) 74, 872
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 7 cut(s) 88, 342, 504, 764, 826, 878, 925
MseI TTAA 4 cut(s) 342, 612, 636, 909
MspCI CTTAAG 1 cut(s) 635
MspR9I CCNGG 1 cut(s) 606
MunI CAATTG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 164, 327, 587
NdeI CATATG 1 cut(s) 724
NdeII GATC 4 cut(s) 222, 367, 727, 953
NlaIII CATG 3 cut(s) 458, 782, 878
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 3 cut(s) 386, 668, 674
PaeR7I CTCGAG 1 cut(s) 830
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 3 cut(s) 23, 58, 740
PkrI GCNGC 2 cut(s) 690, 852
PleI GAGTC 2 cut(s) 73, 872
PpsI GAGTC 2 cut(s) 73, 872
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 830
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
SaqAI TTAA 4 cut(s) 342, 612, 636, 909
SatI GCNGC 2 cut(s) 689, 851
Sau3AI GATC 4 cut(s) 222, 367, 727, 953
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 2 cut(s) 74, 872
ScrFI CCNGG 1 cut(s) 606
SetI ASST 9 cut(s) 18, 153, 276, 396, 737, 813, 855, 888, 940
SfaNI GCATC 3 cut(s) 125, 131, 702
Sfr274I CTCGAG 1 cut(s) 830
SlaI CTCGAG 1 cut(s) 830
SmlI CTYRAG 4 cut(s) 62, 495, 635, 830
SmoI CTYRAG 4 cut(s) 62, 495, 635, 830
Sse9I AATT 5 cut(s) 49, 373, 470, 522, 957
SsiI CCGC 2 cut(s) 688, 865
SspI AATATT 1 cut(s) 359
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 2 cut(s) 144, 816
TaaI ACNGT 2 cut(s) 208, 674
TaqI TCGA 5 cut(s) 238, 592, 599, 738, 831
TasI AATT 5 cut(s) 49, 373, 470, 522, 957
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 691
TfiI GAWTC 3 cut(s) 23, 58, 740
Tru1I TTAA 4 cut(s) 342, 612, 636, 909
Tru9I TTAA 4 cut(s) 342, 612, 636, 909
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 3 cut(s) 386, 668, 674
TseI GCWGC 1 cut(s) 850
Tsp45I GTSAC 3 cut(s) 386, 668, 674
TspDTI ATGAA 5 cut(s) 26, 87, 117, 289, 443
TspRI CASTG 1 cut(s) 679
Vha464I CTTAAG 1 cut(s) 635
XapI RAATTY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 830
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.