Prupe.5G053900_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0022481
Physical Location & Seq
Forward (+)
5772382 .. 5778975
6594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G053900.1

Sequence Viewer

Length: 696 bp
ATGAAGGGGAAAATGGAAGGTGATTTTCAGTTTGGGTCGAATTCAAATTCTTTGGATCTTCTCTCTGAGGTTGCAGTTGTTGTCAAAAATTGGGAGGAAGAAGATGTTGAGAAGGCCATGTCCATGGCTGTGAGAAGCCGCTGCAATCCACTTCAGGGATTTGGGTTTGATGGGTATTTGGTTCCTGACAGGGCCACGATCAAGATAACGAGTAGGGTTAGGGTTTCATCATCATCATCATCATCATCTGCCTTGGATATGTTGCTTCAAGTTACAAGCAATGAATTGATGGAGTTGGAAAAAGCCAACACCTTCAGTTGCATATGCATACCGAAGAAGAAAAGAACAAGTCTGAGGAGGGGGAGGACAATGCTAACTTCCTTTCCATGCTCTTCTCATGATTCCATCCCACTCCATCAGATACCAAGGAAGAAAAGGTCCAATCTGAGGAGGACTAAAAGGGCTTTCTTGCCAGATTTTTCTCATGATTCCACCGTCCAAGTTATAAAAAAGGCTATGCAAGAATTAGAAAGGGTTTTGGCAGAGAAGGGTACTGTTGACTTCACACTCTTCCCACTCAACGACATTTGCATACCCAAGAAGAAAGCTGCCAAAGTGAATGCAATGGAGCTCTGCTCATTCCGGCTTAACTCCCCTTCCTGTTCAAGTACTTCTTGCATCAGCCAGGACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

232

Amino Acids

25.81

Weight (kDa)

9.27

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022481)

Species Orthologous Gene IDs
prunus_persica Prupe.1G534500_v2.0.a1 Prupe.1G539700_v2.0.a1 Prupe.4G183800_v2.0.a1 Prupe.5G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 40, 46
AcuI CTGAAG 2 cut(s) 137, 298
AfaI GTAC 2 cut(s) 553, 670
AfiI CCNNNNNNNGG 2 cut(s) 155, 447
AgsI TTSAA 3 cut(s) 45, 269, 666
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 2 cut(s) 608, 631
AluI AGCT 2 cut(s) 608, 631
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 1 cut(s) 63
AoxI GGCC 2 cut(s) 114, 192
ApeKI GCWGC 2 cut(s) 141, 608
ApoI RAATTY 2 cut(s) 40, 46
AspS9I GGNCC 2 cut(s) 192, 438
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 128, 595
BccI CCATC 4 cut(s) 164, 283, 413, 423
BciT130I CCWGG 1 cut(s) 686
BisI GCNGC 3 cut(s) 139, 142, 609
BlsI GCNGC 3 cut(s) 140, 143, 610
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 192, 438
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BsaJI CCNNGG 3 cut(s) 123, 252, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 447
Bse3DI GCAATG 2 cut(s) 286, 630
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 3 cut(s) 123, 252, 425
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 155, 447
BseMI GCAATG 2 cut(s) 286, 630
BseMII CTCAG 3 cut(s) 57, 344, 437
BseRI GAGGAG 2 cut(s) 370, 463
BseXI GCAGC 2 cut(s) 128, 595
BshFI GGCC 2 cut(s) 116, 194
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 155, 447
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 116, 194
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 2 cut(s) 55, 198
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 116, 194
BspCNI CTCAG 3 cut(s) 58, 345, 438
BspHI TCATGA 2 cut(s) 397, 484
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 397
BsrDI GCAATG 2 cut(s) 286, 630
BssECI CCNNGG 3 cut(s) 123, 252, 425
BssMI GATC 2 cut(s) 55, 198
BssT1I CCWWGG 3 cut(s) 123, 252, 425
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 496, 556, 692
Bst6I CTCTTC 2 cut(s) 397, 575
BstDEI CTNAG 3 cut(s) 66, 353, 446
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 405
BstKTI GATC 2 cut(s) 58, 201
BstMBI GATC 2 cut(s) 55, 198
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 128, 595
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 116, 194
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 405
CciI TCATGA 2 cut(s) 397, 484
Cfr13I GGNCC 2 cut(s) 192, 438
Csp6I GTAC 2 cut(s) 552, 669
CviAII CATG 5 cut(s) 118, 124, 387, 398, 485
CviQI GTAC 2 cut(s) 552, 669
DdeI CTNAG 3 cut(s) 66, 353, 446
DpnI GATC 2 cut(s) 57, 200
DpnII GATC 2 cut(s) 55, 198
Eam1104I CTCTTC 2 cut(s) 397, 575
EarI CTCTTC 2 cut(s) 397, 575
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 3 cut(s) 123, 252, 425
Eco24I GRGCYC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 137, 298
EcoICRI GAGCTC 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 3 cut(s) 123, 252, 425
EcoT22I ATGCAT 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 3 cut(s) 123, 252, 425
FaeI CATG 5 cut(s) 121, 127, 390, 401, 488
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FatI CATG 5 cut(s) 117, 123, 386, 397, 484
FauNDI CATATG 1 cut(s) 323
Fnu4HI GCNGC 3 cut(s) 139, 142, 609
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 3 cut(s) 139, 142, 609
GluI GCNGC 3 cut(s) 139, 142, 609
HaeIII GGCC 2 cut(s) 116, 194
HapII CCGG 1 cut(s) 643
Hin1II CATG 5 cut(s) 121, 127, 390, 401, 488
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 2 cut(s) 401, 488
HpaII CCGG 1 cut(s) 643
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 4 cut(s) 67, 354, 420, 447
Hpy188III TCNNGA 4 cut(s) 185, 202, 398, 485
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 5 cut(s) 11, 106, 322, 541, 666
HpyCH4III ACNGT 3 cut(s) 496, 556, 692
HpyCH4V TGCA 8 cut(s) 74, 144, 321, 327, 520, 591, 623, 678
HpyF3I CTNAG 3 cut(s) 66, 353, 446
Hsp92II CATG 5 cut(s) 121, 127, 390, 401, 488
Kzo9I GATC 2 cut(s) 55, 198
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 7 cut(s) 140, 175, 198, 486, 656, 671, 673
Lsp1109I GCAGC 2 cut(s) 128, 595
LweI GCATC 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 57, 200
MboI GATC 2 cut(s) 55, 198
MboII GAAGA 9 cut(s) 50, 110, 113, 346, 349, 384, 442, 562, 613
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 5 cut(s) 40, 46, 88, 284, 524
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 7 cut(s) 61, 88, 348, 351, 357, 441, 444
Mph1103I ATGCAT 1 cut(s) 329
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 122, 128
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 1 cut(s) 643
MspR9I CCNGG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 323
NdeII GATC 2 cut(s) 55, 198
NlaIII CATG 5 cut(s) 121, 127, 390, 401, 488
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 329
PagI TCATGA 2 cut(s) 397, 484
PciSI GCTCTTC 1 cut(s) 397
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 401, 488
PkrI GCNGC 3 cut(s) 140, 143, 610
PsiI TTATAA 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 192, 438
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 553, 670
RsaNI GTAC 2 cut(s) 552, 669
RseI CAYNNNNRTG 2 cut(s) 122, 128
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 3 cut(s) 139, 142, 609
Sau3AI GATC 2 cut(s) 55, 198
Sau96I GGNCC 2 cut(s) 192, 438
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 1 cut(s) 633
SetI ASST 6 cut(s) 22, 72, 314, 440, 610, 633
SfaNI GCATC 1 cut(s) 687
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 122, 128
Sse9I AATT 5 cut(s) 40, 46, 88, 284, 524
SsiI CCGC 1 cut(s) 139
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 3 cut(s) 123, 252, 425
TaaI ACNGT 3 cut(s) 496, 556, 692
TaqI TCGA 1 cut(s) 38
TasI AATT 5 cut(s) 40, 46, 88, 284, 524
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 401, 488
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TseI GCWGC 2 cut(s) 141, 608
TspDTI ATGAA 3 cut(s) 17, 216, 297
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 2 cut(s) 40, 46
ZrmI AGTACT 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.