Prupe.4G183800_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0022481
Physical Location & Seq
Forward (+)
10886863 .. 10888307
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G183800.1

Sequence Viewer

Length: 828 bp
ATGGGAATGAAGGGCGATTTTCAATTTGGGTCTGATTCAAATTCGTTGAATCTTCTCTCTGAGGTTTCTGTTGTTGTCAAAAATTGGGAGGAAGATGATGTTGAGAAGGCCATGGCCATGGCTGTGAGAAGTTGCTGCTGCAACCCACTTCATGTATATGGATTTGATGGGTGTTTGATTCCTCAGAAGGCCATGGTCAAGCAAAACAAAGGGGTTTTTTCATCATCATCATCTTCTTCTTCTTCCTTGGATATGTTGGCTGAAGTTGCAACCCAACAATTGATGGAGTCGGAGGATGGGAATGGACTCACAACCAAGTGGGTTTTTGAAGAAAAAGCTGTTCTTGCAGAATTCATCAGTTTCTGTGCTAAAAAGGAAAGGTCAGAGTTCAAAACTTTCCACTTCAGTGACATTAACATACCCAAGAAGAAAAGGTCAAGTATGAGGAGGACTCAAAGAAGGTTTTTGCCACATGCTTCTCATGATTCTGTCCAAAGTGTAAATTGTATGAATATGAAAAGGAAGAGGCTTTCTGCTCATTCTGGGAGTGATCATGGTCATGAAGACAACAACAATGAAGCATTCGTGCAAAAGAAACAAAAGCTGGTTCATGTGCAAAGTACTGCAGATGTAAATTCACTGAAGACGTCTGATGACACAGTGCAGCAATGGTCGATCAGGTGTAAATCCCAGTTTCGCTTTGCACTTGTTAAGATTAGCAAGACAAAGGCGGAGGTTCAGCAATGTGGACACGGTGGAAGCACTTATAGCAGTAGCCAAAAGGGGCAAAGGGGCTCCTCCATTTCATGCATCAGCCACGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

276

Amino Acids

30.66

Weight (kDa)

8.86

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022481)

Species Orthologous Gene IDs
prunus_persica Prupe.1G534500_v2.0.a1 Prupe.1G539700_v2.0.a1 Prupe.4G183800_v2.0.a1 Prupe.5G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 650
AciI CCGC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 3 cut(s) 40, 350, 634
AcuI CTGAAG 3 cut(s) 282, 388, 662
AcyI GRCGYC 1 cut(s) 647
AfaI GTAC 1 cut(s) 622
AgsI TTSAA 5 cut(s) 23, 39, 49, 329, 391
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 2 cut(s) 338, 604
AluI AGCT 2 cut(s) 338, 604
AlwNI CAGNNNCTG 1 cut(s) 363
AoxI GGCC 3 cut(s) 108, 114, 189
ApeKI GCWGC 3 cut(s) 135, 138, 664
ApoI RAATTY 3 cut(s) 40, 350, 634
BalI TGGCCA 1 cut(s) 116
BanII GRGCYC 1 cut(s) 797
BbsI GAAGAC 2 cut(s) 570, 650
BbvI GCAGC 3 cut(s) 122, 125, 676
BccI CCATC 3 cut(s) 161, 277, 290
BclI TGATCA 1 cut(s) 550
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 3 cut(s) 136, 139, 665
BlsI GCNGC 3 cut(s) 137, 140, 666
BmcAI AGTACT 1 cut(s) 622
BmiI GGNNCC 1 cut(s) 796
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 1 cut(s) 819
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 2 cut(s) 570, 650
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 4 cut(s) 111, 117, 192, 246
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 2 cut(s) 674, 749
BseDI CCNNGG 4 cut(s) 111, 117, 192, 246
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 2 cut(s) 674, 749
BseMII CTCAG 2 cut(s) 51, 197
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 460, 787
BseXI GCAGC 3 cut(s) 122, 125, 676
BsgI GTGCAG 1 cut(s) 683
BshFI GGCC 3 cut(s) 110, 116, 191
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 3 cut(s) 110, 116, 191
Bsp1286I GDGCHC 1 cut(s) 797
Bsp143I GATC 2 cut(s) 550, 675
Bsp19I CCATGG 3 cut(s) 111, 117, 192
BspACI CCGC 1 cut(s) 731
BspANI GGCC 3 cut(s) 110, 116, 191
BspCNI CTCAG 2 cut(s) 52, 196
BspHI TCATGA 2 cut(s) 481, 559
BspLI GGNNCC 1 cut(s) 796
BspMAI CTGCAG 1 cut(s) 628
BsrDI GCAATG 2 cut(s) 674, 749
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 4 cut(s) 111, 117, 192, 246
BssMI GATC 2 cut(s) 550, 675
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 4 cut(s) 111, 117, 192, 246
Bst4CI ACNGT 3 cut(s) 661, 755, 824
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 60, 183
BstDSI CCRYGG 3 cut(s) 111, 117, 192
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 553, 678
BstMBI GATC 2 cut(s) 550, 675
BstMWI GCNNNNNNNGC 3 cut(s) 266, 344, 768
BstNSI RCATGY 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 3 cut(s) 122, 125, 676
BstV2I GAAGAC 2 cut(s) 570, 650
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 3 cut(s) 110, 116, 191
BtgI CCRYGG 3 cut(s) 111, 117, 192
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 412, 638, 666
CaiI CAGNNNCTG 1 cut(s) 363
CciI TCATGA 2 cut(s) 481, 559
Csp6I GTAC 1 cut(s) 621
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 60, 183
DpnI GATC 2 cut(s) 552, 677
DpnII GATC 2 cut(s) 550, 675
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 1 cut(s) 746
Eco130I CCWWGG 4 cut(s) 111, 117, 192, 246
Eco24I GRGCYC 1 cut(s) 797
Eco57I CTGAAG 3 cut(s) 282, 388, 662
EcoRI GAATTC 1 cut(s) 350
EcoT14I CCWWGG 4 cut(s) 111, 117, 192, 246
EcoT22I ATGCAT 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 4 cut(s) 111, 117, 192, 246
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 3 cut(s) 136, 139, 665
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 797
Fsp4HI GCNGC 3 cut(s) 136, 139, 665
GluI GCNGC 3 cut(s) 136, 139, 665
HaeIII GGCC 3 cut(s) 110, 116, 191
Hin1I GRCGYC 1 cut(s) 647
HinfI GANTC 7 cut(s) 35, 49, 178, 287, 306, 451, 485
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 6 cut(s) 34, 61, 186, 292, 385, 652
Hpy188III TCNNGA 2 cut(s) 482, 560
Hpy8I GTNNAC 1 cut(s) 749
HpyAV CCTTC 4 cut(s) 4, 100, 181, 453
HpyCH4III ACNGT 3 cut(s) 661, 755, 824
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 9 cut(s) 141, 269, 347, 589, 616, 626, 664, 704, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 344, 768
HpyF3I CTNAG 2 cut(s) 60, 183
HpySE526I ACGT 1 cut(s) 647
Hsp92I GRCGYC 1 cut(s) 647
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 2 cut(s) 550, 675
LmnI GCTCC 1 cut(s) 800
LpnPI CCDG 4 cut(s) 528, 590, 664, 704
Lsp1109I GCAGC 3 cut(s) 122, 125, 676
LweI GCATC 1 cut(s) 819
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 1 cut(s) 407
MalI GATC 2 cut(s) 552, 677
MboI GATC 2 cut(s) 550, 675
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 797
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 7 cut(s) 23, 40, 82, 278, 350, 502, 634
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 3 cut(s) 296, 300, 445
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 9 cut(s) 55, 82, 192, 286, 438, 441, 519, 727, 808
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 812
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 414, 711, 826
MslI CAYNNNNRTG 5 cut(s) 116, 122, 156, 405, 558
Msp20I TGGCCA 1 cut(s) 116
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 581
MwoI GCNNNNNNNGC 3 cut(s) 266, 344, 768
NcoI CCATGG 3 cut(s) 111, 117, 192
NdeII GATC 2 cut(s) 550, 675
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 812
NspI RCATGY 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 405
PagI TCATGA 2 cut(s) 481, 559
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 4 cut(s) 35, 49, 178, 485
PkrI GCNGC 3 cut(s) 137, 140, 666
PleI GAGTC 3 cut(s) 295, 300, 445
PpsI GAGTC 3 cut(s) 295, 300, 445
PspN4I GGNNCC 1 cut(s) 796
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 5 cut(s) 116, 122, 156, 405, 558
SaqAI TTAA 3 cut(s) 414, 711, 826
SatI GCNGC 3 cut(s) 136, 139, 665
Sau3AI GATC 2 cut(s) 550, 675
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 3 cut(s) 296, 300, 445
SduI GDGCHC 1 cut(s) 797
SetI ASST 9 cut(s) 66, 340, 383, 437, 464, 606, 650, 683, 738
SfaNI GCATC 1 cut(s) 819
SfcI CTRYAG 1 cut(s) 624
SmiMI CAYNNNNRTG 5 cut(s) 116, 122, 156, 405, 558
Sse9I AATT 7 cut(s) 23, 40, 82, 278, 350, 502, 634
SsiI CCGC 1 cut(s) 731
StyI CCWWGG 4 cut(s) 111, 117, 192, 246
TaaI ACNGT 3 cut(s) 661, 755, 824
TaiI ACGT 1 cut(s) 650
TaqI TCGA 1 cut(s) 674
TasI AATT 7 cut(s) 23, 40, 82, 278, 350, 502, 634
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 4 cut(s) 35, 49, 178, 485
Tru1I TTAA 3 cut(s) 414, 711, 826
Tru9I TTAA 3 cut(s) 414, 711, 826
TscAI CASTG 3 cut(s) 412, 645, 666
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 135, 138, 664
Tsp45I GTSAC 1 cut(s) 407
TspRI CASTG 3 cut(s) 412, 645, 666
XapI RAATTY 3 cut(s) 40, 350, 634
XceI RCATGY 1 cut(s) 476
ZraI GACGTC 1 cut(s) 648
ZrmI AGTACT 1 cut(s) 622
Zsp2I ATGCAT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.