Prupe.1G539700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022481
Physical Location & Seq
Forward (+)
44101727 .. 44103085
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G539700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1359 bp
ATGAAGGGTGATTTTCAATTTGGGTCTGATTCAAATTCGTTGAATCTTCTCTCTGAGGTTTCTGTTGTTGTTAAAGATTGGGATGAAGATGATGTTGAGAAGGCCATGGCCATGGCTGTGAGAAGTTGCTGCTGCAACCCACTTCATGGATATGGATTTGATGGGTGTTTGATTCCTCAGAAGGCCATGGTCAAGCAAAACAAAAGGGTTTTCTCATCATCATCTTCTTCTTCTTCTTCCTTGGATATGTTGGCTGAAGTTGCAACCCAACAATTGATGGAGTTGGGGAATGGGAATGGACTCACAACCAAGTGGGTTTTTGACGAAAAAGCTGTTCTTGCAGAATTCATCAGTTTCTGTGCTAAAAAGAAAAGGTCAGAGTTCAAAACATTCCACTTCAGTGACATTAACGTACCCAAGAAGAAAAGGTCAAGTATGAAGAGGACTCAAAGAAGGTTTTTGCCACATGCTTCTCATGATTCTGTCCTAAGTATAAGTTGTATGAATATGAAAAGGAAGAGGCTTTCTGCTCATTCTGGGAGTGATCATGGTCATGAAGACAACAACAATGAAGCACTAGTGCAAAAGAAACAAAAGCTGGTTCATGTCAAAAGTACTGCAGATGTAAAGTCACCATCATCACTGAAACGAGAGATGCCTCAAGACATGAAAAACAGGATTAGTAGCATTGGTGGTGGAGACCTCAAATTGGTGATCGAGAAGGAACTTTTTGATACTGATGTCGCCGACAATAACCAACGGTTTTCCATACCGATGAAACAAGTTAAAGAGGATTTTCTTAGCGAAAAGGATCAGACTGAGTTGAAGCTACGTAATGGTCACAATCAGAAGCATCTTGTTGGTATACCTGTTAAAGTGTTGGATCCATCTCTAAAGGAGTACACTTTACGCCTCAAGAAATGGACCATGGGAGGTAGTATTGTGTACAATCTGGTTTCAGGTTGGAGAGAAATTGCCAAGGCAAACAAATTGAAGACCGGTGATACACTGCAGCTATGGTCATTCCGAGATGACTCCAACAAGCTTGGCTTTGCACTTGTTAAAGTTAGCACCACAACAATGGAGGTTGATCAAAGTGGACCTGGTGCAAGAACCAGTAGCCAAAATGGGACAAACAGTCACACTCTCTCAACTGCCAAAGTAAATTCACTGAAGACATCTGATGACACAGTGCAGTGTTGGTCGATCAAGTGTAAATCCCAGTTTCGCTTTGCACTTGTTAAGGTTAGCAAGACCAAGGTGGAGGTTCAACAATGTAGACACGGTGCAAGCACTTGTAGCAGTTGCCAAAATGGGCAAACGGGCTCCTCCGTTTCATGTATCAGCCATGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

453

Amino Acids

50.27

Weight (kDa)

9.29

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022481)

Species Orthologous Gene IDs
prunus_persica Prupe.1G534500_v2.0.a1 Prupe.1G539700_v2.0.a1 Prupe.4G183800_v2.0.a1 Prupe.5G053900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AccI GTMKAC 2 cut(s) 865, 1279
AclWI GGATC 3 cut(s) 819, 878, 891
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 3 cut(s) 34, 344, 1165
AcuI CTGAAG 3 cut(s) 276, 382, 1193
AfaI GTAC 4 cut(s) 414, 616, 902, 947
AfiI CCNNNNNNNGG 2 cut(s) 146, 709
AgeI ACCGGT 1 cut(s) 998
AgsI TTSAA 7 cut(s) 17, 33, 43, 385, 826, 994, 1271
AhdI GACNNNNNGTC 1 cut(s) 1137
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 1102
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 5 cut(s) 332, 598, 829, 1015, 1045
AluI AGCT 5 cut(s) 332, 598, 829, 1015, 1045
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 3 cut(s) 819, 878, 891
AlwNI CAGNNNCTG 1 cut(s) 357
AoxI GGCC 3 cut(s) 102, 108, 183
ApeKI GCWGC 3 cut(s) 129, 132, 1012
ApoI RAATTY 3 cut(s) 34, 344, 1165
AsiGI ACCGGT 1 cut(s) 998
AspS9I GGNCC 2 cut(s) 924, 1100
AsuHPI GGTGA 4 cut(s) 20, 624, 724, 1013
AvaII GGWCC 2 cut(s) 924, 1100
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BalI TGGCCA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 1328
BbsI GAAGAC 3 cut(s) 564, 1001, 1181
BbvI GCAGC 3 cut(s) 116, 119, 1024
BccI CCATC 4 cut(s) 155, 271, 643, 895
BciT130I CCWGG 1 cut(s) 1104
BclI TGATCA 2 cut(s) 544, 1090
BcoDI GTCTC 1 cut(s) 693
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 2 cut(s) 618, 1010
BisI GCNGC 3 cut(s) 130, 133, 1013
BlsI GCNGC 3 cut(s) 131, 134, 1014
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 1 cut(s) 1104
Bme18I GGWCC 2 cut(s) 924, 1100
BmeRI GACNNNNNGTC 1 cut(s) 1137
BmgT120I GGNCC 2 cut(s) 924, 1100
BmiI GGNNCC 2 cut(s) 885, 1327
BmrFI CCNGG 1 cut(s) 1104
BmrI ACTGGG 1 cut(s) 1216
BmsI GCATC 2 cut(s) 645, 862
BmuI ACTGGG 1 cut(s) 1216
BpiI GAAGAC 3 cut(s) 564, 1001, 1181
BpuEI CTTGAG 2 cut(s) 645, 899
BsaAI YACGTR 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
BsaWI WCCGGW 1 cut(s) 998
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 709
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 2 cut(s) 1116, 1222
BseBI CCWGG 1 cut(s) 1104
BseDI CCNNGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 146, 709
BseMII CTCAG 3 cut(s) 45, 191, 810
BseNI ACTGG 2 cut(s) 1116, 1222
BseRI GAGGAG 1 cut(s) 1318
BseXI GCAGC 3 cut(s) 116, 119, 1024
BsgI GTGCAG 1 cut(s) 1214
BshFI GGCC 3 cut(s) 104, 110, 185
BshTI ACCGGT 1 cut(s) 998
BsiSI CCGG 1 cut(s) 999
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 2 cut(s) 146, 709
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 104, 110, 185
Bso31I GGTCTC 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 1328
Bsp1407I TGTACA 1 cut(s) 945
Bsp143I GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
Bsp19I CCATGG 4 cut(s) 105, 111, 186, 927
BspANI GGCC 3 cut(s) 104, 110, 185
BspCNI CTCAG 3 cut(s) 46, 190, 811
BspHI TCATGA 2 cut(s) 475, 553
BspLI GGNNCC 2 cut(s) 885, 1327
BspMAI CTGCAG 2 cut(s) 622, 1014
BspPI GGATC 3 cut(s) 819, 878, 891
BspTNI GGTCTC 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 998
BsrGI TGTACA 1 cut(s) 945
BsrI ACTGG 2 cut(s) 1116, 1222
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
BssMI GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
BssNAI GTATAC 1 cut(s) 866
BssT1I CCWWGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
Bst1107I GTATAC 1 cut(s) 866
Bst2UI CCWGG 1 cut(s) 1104
Bst4CI ACNGT 5 cut(s) 762, 1139, 1192, 1286, 1355
Bst6I CTCTTC 2 cut(s) 434, 512
BstAUI TGTACA 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 833
BstC8I GCNNGC 1 cut(s) 1291
BstDEI CTNAG 5 cut(s) 54, 177, 488, 800, 819
BstDSI CCRYGG 4 cut(s) 105, 111, 186, 927
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 6 cut(s) 547, 717, 814, 886, 1093, 1209
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
BstMWI GCNNNNNNNGC 3 cut(s) 260, 338, 1299
BstNI CCWGG 1 cut(s) 1104
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 1102
BstSFI CTRYAG 2 cut(s) 618, 1010
BstSNI TACGTA 1 cut(s) 833
BstV1I GCAGC 3 cut(s) 116, 119, 1024
BstV2I GAAGAC 3 cut(s) 564, 1001, 1181
BstX2I RGATCY 1 cut(s) 883
BstXI CCANNNNNNTGG 2 cut(s) 112, 1081
BstYI RGATCY 1 cut(s) 883
BstZ17I GTATAC 1 cut(s) 866
BsuRI GGCC 3 cut(s) 104, 110, 185
BtgI CCRYGG 4 cut(s) 105, 111, 186, 927
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 2 cut(s) 1007, 1202
BtsIMutI CAGTG 6 cut(s) 406, 641, 1007, 1169, 1197, 1202
Cac8I GCNNGC 1 cut(s) 1291
CaiI CAGNNNCTG 1 cut(s) 357
CciI TCATGA 2 cut(s) 475, 553
Cfr10I RCCGGY 1 cut(s) 998
Cfr13I GGNCC 2 cut(s) 924, 1100
CsiI ACCWGGT 1 cut(s) 1102
Csp6I GTAC 4 cut(s) 413, 615, 901, 946
CspAI ACCGGT 1 cut(s) 998
CviQI GTAC 4 cut(s) 413, 615, 901, 946
DdeI CTNAG 5 cut(s) 54, 177, 488, 800, 819
DpnI GATC 6 cut(s) 546, 716, 813, 885, 1092, 1208
DpnII GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
DriI GACNNNNNGTC 1 cut(s) 1137
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 434, 512
Eam1105I GACNNNNNGTC 1 cut(s) 1137
EarI CTCTTC 2 cut(s) 434, 512
Eco105I TACGTA 1 cut(s) 833
Eco130I CCWWGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
Eco24I GRGCYC 1 cut(s) 1328
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 924, 1100
Eco57I CTGAAG 3 cut(s) 276, 382, 1193
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 1102
EcoT14I CCWWGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
EcoT38I GRGCYC 1 cut(s) 1328
ErhI CCWWGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
FalI AAGNNNNNCTT 4 cut(s) 321, 353, 1034, 1066
FaqI GGGAC 1 cut(s) 1144
FbaI TGATCA 2 cut(s) 544, 1090
FblI GTMKAC 2 cut(s) 865, 1279
Fnu4HI GCNGC 3 cut(s) 130, 133, 1013
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 1328
Fsp4HI GCNGC 3 cut(s) 130, 133, 1013
FspBI CTAG 1 cut(s) 578
GluI GCNGC 3 cut(s) 130, 133, 1013
HaeIII GGCC 3 cut(s) 104, 110, 185
HapII CCGG 1 cut(s) 999
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 7 cut(s) 29, 43, 172, 300, 445, 479, 1034
HpaII CCGG 1 cut(s) 999
HphI GGTGA 4 cut(s) 20, 624, 724, 1013
Hpy166II GTNNAC 5 cut(s) 866, 903, 946, 1100, 1280
Hpy188I TCNGA 8 cut(s) 28, 55, 180, 379, 816, 849, 1028, 1183
Hpy188III TCNNGA 5 cut(s) 476, 554, 662, 718, 916
Hpy8I GTNNAC 5 cut(s) 866, 903, 946, 1100, 1280
HpyAV CCTTC 4 cut(s) 94, 175, 447, 715
HpyCH4III ACNGT 5 cut(s) 762, 1139, 1192, 1286, 1355
HpyCH4IV ACGT 2 cut(s) 411, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 338, 1299
HpyF3I CTNAG 5 cut(s) 54, 177, 488, 800, 819
HpySE526I ACGT 2 cut(s) 411, 832
Ksp22I TGATCA 2 cut(s) 544, 1090
Kzo9I GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
LmnI GCTCC 1 cut(s) 1331
Lsp1109I GCAGC 3 cut(s) 116, 119, 1024
LweI GCATC 2 cut(s) 645, 862
MabI ACCWGGT 1 cut(s) 1102
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 411, 832
MaeIII GTNAC 4 cut(s) 401, 630, 839, 1139
MalI GATC 6 cut(s) 546, 716, 813, 885, 1092, 1208
MboI GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 1 cut(s) 1328
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 8 cut(s) 17, 34, 272, 344, 707, 972, 989, 1165
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 3 cut(s) 294, 439, 1028
MmeI TCCRAC 3 cut(s) 861, 944, 1062
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 7 cut(s) 72, 408, 786, 873, 1062, 1242, 1357
MslI CAYNNNNRTG 7 cut(s) 110, 116, 150, 399, 552, 773, 1079
Msp20I TGGCCA 1 cut(s) 110
MspI CCGG 1 cut(s) 999
MspR9I CCNGG 1 cut(s) 1104
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 1104
MwoI GCNNNNNNNGC 3 cut(s) 260, 338, 1299
NcoI CCATGG 4 cut(s) 105, 111, 186, 927
NdeII GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
NlaIV GGNNCC 2 cut(s) 885, 1327
NmuCI GTSAC 4 cut(s) 401, 630, 839, 1139
NspI RCATGY 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 399
PagI TCATGA 2 cut(s) 475, 553
PfeI GAWTC 4 cut(s) 29, 43, 172, 479
PflMI CCANNNNNTGG 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 998
PkrI GCNGC 3 cut(s) 131, 134, 1014
PleI GAGTC 3 cut(s) 294, 439, 1028
PpsI GAGTC 3 cut(s) 294, 439, 1028
Ppu21I YACGTR 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 1102
PspGI CCWGG 1 cut(s) 1102
PspN4I GGNNCC 2 cut(s) 885, 1327
PspPI GGNCC 2 cut(s) 924, 1100
PstI CTGCAG 2 cut(s) 622, 1014
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 883
RsaI GTAC 4 cut(s) 414, 616, 902, 947
RsaNI GTAC 4 cut(s) 413, 615, 901, 946
RseI CAYNNNNRTG 7 cut(s) 110, 116, 150, 399, 552, 773, 1079
SaqAI TTAA 7 cut(s) 72, 408, 786, 873, 1062, 1242, 1357
SatI GCNGC 3 cut(s) 130, 133, 1013
Sau3AI GATC 6 cut(s) 544, 714, 811, 883, 1090, 1206
Sau96I GGNCC 2 cut(s) 924, 1100
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 3 cut(s) 294, 439, 1028
ScrFI CCNGG 1 cut(s) 1104
SduI GDGCHC 1 cut(s) 1328
SexAI ACCWGGT 1 cut(s) 1102
SfaNI GCATC 2 cut(s) 645, 862
SfcI CTRYAG 2 cut(s) 618, 1010
SinI GGWCC 2 cut(s) 924, 1100
SmiMI CAYNNNNRTG 7 cut(s) 110, 116, 150, 399, 552, 773, 1079
SmlI CTYRAG 2 cut(s) 660, 914
SmoI CTYRAG 2 cut(s) 660, 914
SnaBI TACGTA 1 cut(s) 833
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 8 cut(s) 17, 34, 272, 344, 707, 972, 989, 1165
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 1102
StyI CCWWGG 7 cut(s) 105, 111, 186, 240, 927, 978, 1257
TaaI ACNGT 5 cut(s) 762, 1139, 1192, 1286, 1355
TaiI ACGT 2 cut(s) 414, 835
TaqI TCGA 2 cut(s) 717, 1205
TasI AATT 8 cut(s) 17, 34, 272, 344, 707, 972, 989, 1165
TatI WGTACW 3 cut(s) 614, 900, 945
TfiI GAWTC 4 cut(s) 29, 43, 172, 479
Tru1I TTAA 7 cut(s) 72, 408, 786, 873, 1062, 1242, 1357
Tru9I TTAA 7 cut(s) 72, 408, 786, 873, 1062, 1242, 1357
TscAI CASTG 6 cut(s) 406, 648, 1014, 1176, 1197, 1202
TseFI GTSAC 4 cut(s) 401, 630, 839, 1139
TseI GCWGC 3 cut(s) 129, 132, 1012
Tsp45I GTSAC 4 cut(s) 401, 630, 839, 1139
TspGWI ACGGA 1 cut(s) 1321
TspRI CASTG 6 cut(s) 406, 648, 1014, 1176, 1197, 1202
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 924, 1100
XapI RAATTY 3 cut(s) 34, 344, 1165
XceI RCATGY 1 cut(s) 470
XmiI GTMKAC 2 cut(s) 865, 1279
XspI CTAG 1 cut(s) 578
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.