Prupe.1G578600_v2.0.a1

sodium metabolite cotransporter BASS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022463
Physical Location & Seq
Reverse (-)
47081646 .. 47086638
4993 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G578600.1

Sequence Viewer

Length: 1221 bp
ATGTCCCTCGCTTTCAGACTCAGTTGCTTCACTTCACCTCCAAACTTAACCCACCAAAGAATCTCTGTTAGACCCAAAACGCCTTCACATTTTCCACCACCAAAGCTCACAACTTTACCAACAATCAGAGCTGTTCAAGAAAATTCTGAACACTTTGCTGTGTCTCCAGGTAAACCCAGACGGGAAAACATACTGTCCACTGCAGCAAGCTTGTACCCTTTCTATGTGACTGCTGGGGGTGTTGTTGCTTGCCTCAAACCCTCTGCTTTTTCATGGTTTGTTGAGAGAAGCCCAGCTTCATATACCTTGTCTCTTGGGTTGATAATGTTGTCAATGGGTCTCACTTTGGAGTATAAGGACTTGCTTGGCTTGTTCCGCCAAAGGCCCCTTTCAATATTGTTTGGATGTGTTGCTCAGTACACTATTATGCCCGTGTTTGCAACACTTGTTGCTAAAATATTTGGGCTTCCACCGTCTCTTTCAGTTGGTTTAATATTGCTTGGCTGCTGCCCTGGAGGTACTGCCTCCAATGTGGTGACCTTAATTGCTCAAGGGGATGTTCCTCTCTCTATTGTAATGACGGTATGCACAACTCTTGGGGCAGTAGCCCTGACTCCTCTACTAACAAAGATATTGGCAGGGACTTACGTCCCTGTGGATGCTGCCAAACTGTCAATCAGCACCATGCAGGTCGTTGTTGCTCCAATTTTGTTAGGTTCTTATATGCAGAGTGCATTTCCTGCAGTGGTTAAAATTGTGATACCTTTTGCACCACTTTTTGCTGTTCTAGCTGCATCACTGCTTGCATGCAGTGTATTCTCTGAGAATGTTGTCCGTCTCAAAGCTTCAATGGTTGCTGTAACATTGCCGGCTGATCTGTCTCTAATTGCTCGTGCTCAGACAATGTTATCTGGAGAAGTTGGTGTGGTTATTCTTTCTGTGCTGTTAGTACATATTGCTGGTTTCTTTGTGGGGTATATATCAGCAGCTGTTTGCGGGTTTAGAGAAGCACAAAGACGAGCAATATCAATTGAGGTTGGTATGCAAAATTCTTCTTTGGGTGTGGTTTTGGCCACTTCTCATTTCACCTCGCCAATGGTTGCATTACCCGCCGCATTGTCTGCTGTGATTATGAATATAATGGGAAGCAGTCTGGCATTCTTTTGGAGATATGTAGATCCTTCTGACTCCAAGGAGACTCCTACAGTTAAGGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBF

Protein Analysis

407

Amino Acids

43.01

Weight (kDa)

9.47

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022463)

Species Orthologous Gene IDs
prunus_persica Prupe.1G578600_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.6G004300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AciI CCGC 4 cut(s) 376, 996, 1110, 1113
AclWI GGATC 1 cut(s) 1172
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 2 cut(s) 142, 1048
AfaI GTAC 4 cut(s) 215, 419, 520, 951
AgsI TTSAA 3 cut(s) 137, 393, 849
AjnI CCWGG 2 cut(s) 166, 511
AluBI AGCT 7 cut(s) 106, 131, 210, 296, 791, 845, 989
AluI AGCT 7 cut(s) 106, 131, 210, 296, 791, 845, 989
Alw21I GWGCWC 1 cut(s) 898
Alw26I GTCTC 7 cut(s) 168, 315, 344, 480, 842, 885, 1190
AlwI GGATC 1 cut(s) 1172
AlwNI CAGNNNCTG 1 cut(s) 989
AoxI GGCC 2 cut(s) 383, 1071
ApeKI GCWGC 6 cut(s) 203, 504, 507, 662, 791, 986
ApoI RAATTY 2 cut(s) 142, 1048
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 27, 547, 1078
BalI TGGCCA 1 cut(s) 1073
BauI CACGAG 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 898
BbvI GCAGC 6 cut(s) 215, 491, 494, 649, 778, 998
BciT130I CCWGG 2 cut(s) 168, 513
BcoDI GTCTC 7 cut(s) 168, 315, 344, 480, 842, 885, 1190
BfaI CTAG 1 cut(s) 788
BfmI CTRYAG 3 cut(s) 201, 741, 1203
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 7 cut(s) 204, 505, 508, 663, 792, 987, 1113
BlsI GCNGC 7 cut(s) 205, 506, 509, 664, 793, 988, 1114
Bme1390I CCNGG 2 cut(s) 168, 513
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 168, 513
BmsI GCATC 2 cut(s) 649, 803
BoxI GACNNNNGTC 1 cut(s) 647
BpmI CTGGAG 3 cut(s) 150, 534, 933
BpuEI CTTGAG 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 511, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse118I RCCGGY 1 cut(s) 868
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 2 cut(s) 168, 513
BseDI CCNNGG 2 cut(s) 511, 1191
BseGI GGATG 3 cut(s) 410, 562, 664
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 4 cut(s) 34, 428, 813, 911
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 6 cut(s) 215, 491, 494, 649, 778, 998
BseYI CCCAGC 2 cut(s) 233, 292
BshFI GGCC 2 cut(s) 385, 1073
BsiHKAI GWGCWC 1 cut(s) 898
BsiSI CCGG 1 cut(s) 869
BslFI GGGAC 2 cut(s) 635, 655
BsmAI GTCTC 7 cut(s) 168, 315, 344, 480, 842, 885, 1190
BsmBI CGTCTC 2 cut(s) 480, 842
BsmFI GGGAC 2 cut(s) 635, 655
BsmI GAATGC 1 cut(s) 1157
BsnI GGCC 2 cut(s) 385, 1073
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 898
Bsp143I GATC 2 cut(s) 874, 1177
BspACI CCGC 4 cut(s) 376, 996, 1110, 1113
BspANI GGCC 2 cut(s) 385, 1073
BspCNI CTCAG 4 cut(s) 33, 427, 814, 910
BspLI GGNNCC 1 cut(s) 386
BspMAI CTGCAG 2 cut(s) 205, 745
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 1 cut(s) 1172
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 868
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 511, 1191
BssMI GATC 2 cut(s) 874, 1177
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 1191
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 168, 513
Bst4CI ACNGT 5 cut(s) 195, 474, 583, 672, 1207
BstAPI GCANNNNNTGC 2 cut(s) 740, 1121
BstC8I GCNNGC 5 cut(s) 208, 250, 804, 808, 870
BstDEI CTNAG 4 cut(s) 20, 414, 822, 897
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 3 cut(s) 410, 562, 664
BstKTI GATC 2 cut(s) 877, 1180
BstMAI GTCTC 7 cut(s) 168, 315, 344, 480, 842, 885, 1190
BstMBI GATC 2 cut(s) 874, 1177
BstMWI GCNNNNNNNGC 5 cut(s) 375, 740, 788, 1109, 1121
BstNI CCWGG 2 cut(s) 168, 513
BstNSI RCATGY 1 cut(s) 810
BstPAI GACNNNNGTC 1 cut(s) 647
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 166, 511
BstSFI CTRYAG 3 cut(s) 201, 741, 1203
BstV1I GCAGC 6 cut(s) 215, 491, 494, 649, 778, 998
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BsuRI GGCC 2 cut(s) 385, 1073
BtsCI GGATG 3 cut(s) 410, 562, 664
BtsI GCAGTG 4 cut(s) 198, 750, 797, 817
BtsIMutI CAGTG 4 cut(s) 198, 750, 797, 817
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 5 cut(s) 208, 250, 804, 808, 870
CaiI CAGNNNCTG 1 cut(s) 989
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 4 cut(s) 214, 418, 519, 950
CviAII CATG 3 cut(s) 273, 685, 807
CviQI GTAC 4 cut(s) 214, 418, 519, 950
DdeI CTNAG 4 cut(s) 20, 414, 822, 897
DpnI GATC 2 cut(s) 876, 1179
DpnII GATC 2 cut(s) 874, 1177
EaeI YGGCCR 1 cut(s) 1071
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 1191
Eco31I GGTCTC 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 384
EcoO65I GGTNACC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 166, 511
EcoT14I CCWWGG 1 cut(s) 1191
ErhI CCWWGG 1 cut(s) 1191
Esp3I CGTCTC 2 cut(s) 480, 842
FaeI CATG 3 cut(s) 276, 688, 810
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 2 cut(s) 635, 655
FatI CATG 3 cut(s) 272, 684, 806
FauI CCCGC 2 cut(s) 989, 1117
Fnu4HI GCNGC 7 cut(s) 204, 505, 508, 663, 792, 987, 1113
FokI GGATG 3 cut(s) 417, 569, 671
Fsp4HI GCNGC 7 cut(s) 204, 505, 508, 663, 792, 987, 1113
FspBI CTAG 1 cut(s) 788
GluI GCNGC 7 cut(s) 204, 505, 508, 663, 792, 987, 1113
GsaI CCCAGC 2 cut(s) 237, 296
GsuI CTGGAG 3 cut(s) 150, 534, 933
HaeIII GGCC 2 cut(s) 385, 1073
HapII CCGG 1 cut(s) 869
Hin1II CATG 3 cut(s) 276, 688, 810
HindIII AAGCTT 2 cut(s) 208, 843
HinfI GANTC 5 cut(s) 18, 60, 613, 1187, 1198
HpaII CCGG 1 cut(s) 869
HphI GGTGA 3 cut(s) 27, 547, 1078
Hpy166II GTNNAC 3 cut(s) 173, 198, 420
Hpy188I TCNGA 6 cut(s) 17, 128, 148, 823, 900, 1186
Hpy188III TCNNGA 2 cut(s) 137, 912
Hpy8I GTNNAC 3 cut(s) 173, 198, 420
HpyAV CCTTC 2 cut(s) 93, 1191
HpyCH4III ACNGT 5 cut(s) 195, 474, 583, 672, 1207
HpyCH4IV ACGT 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 375, 740, 788, 1109, 1121
HpyF3I CTNAG 4 cut(s) 20, 414, 822, 897
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 3 cut(s) 276, 688, 810
KroI GCCGGC 1 cut(s) 868
KroNI GCCGGC 1 cut(s) 870
Kzo9I GATC 2 cut(s) 874, 1177
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 6 cut(s) 215, 491, 494, 649, 778, 998
LweI GCATC 2 cut(s) 649, 803
MaeI CTAG 1 cut(s) 788
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 3 cut(s) 226, 535, 859
MalI GATC 2 cut(s) 876, 1179
MboI GATC 2 cut(s) 874, 1177
MboII GAAGA 1 cut(s) 1044
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 1 cut(s) 898
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 7 cut(s) 142, 543, 705, 753, 885, 1029, 1048
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 4 cut(s) 12, 607, 1181, 1192
Mox20I TGGCCA 1 cut(s) 1073
MroNI GCCGGC 1 cut(s) 868
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 6 cut(s) 47, 491, 542, 750, 1209, 1215
MslI CAYNNNNRTG 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 1 cut(s) 869
MspR9I CCNGG 2 cut(s) 168, 513
MunI CAATTG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 1157
MvaI CCWGG 2 cut(s) 168, 513
MwoI GCNNNNNNNGC 5 cut(s) 375, 740, 788, 1109, 1121
NaeI GCCGGC 1 cut(s) 870
NdeII GATC 2 cut(s) 874, 1177
NgoMIV GCCGGC 1 cut(s) 868
NlaIII CATG 3 cut(s) 276, 688, 810
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 2 cut(s) 226, 535
NspI RCATGY 1 cut(s) 810
PaeI GCATGC 1 cut(s) 810
PctI GAATGC 1 cut(s) 1157
PdiI GCCGGC 1 cut(s) 870
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 7 cut(s) 205, 506, 509, 664, 793, 988, 1114
PleI GAGTC 4 cut(s) 12, 607, 1181, 1192
PpsI GAGTC 4 cut(s) 12, 607, 1181, 1192
PshAI GACNNNNGTC 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 166, 511
PspEI GGTNACC 1 cut(s) 535
PspFI CCCAGC 2 cut(s) 233, 292
PspGI CCWGG 2 cut(s) 166, 511
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 384
PstI CTGCAG 2 cut(s) 205, 745
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 1 cut(s) 1177
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 4 cut(s) 215, 419, 520, 951
RsaNI GTAC 4 cut(s) 214, 418, 519, 950
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 6 cut(s) 47, 491, 542, 750, 1209, 1215
SatI GCNGC 7 cut(s) 204, 505, 508, 663, 792, 987, 1113
Sau3AI GATC 2 cut(s) 874, 1177
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 4 cut(s) 12, 607, 1181, 1192
ScrFI CCNGG 2 cut(s) 168, 513
SduI GDGCHC 1 cut(s) 898
SfaNI GCATC 2 cut(s) 649, 803
SfcI CTRYAG 3 cut(s) 201, 741, 1203
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SphI GCATGC 1 cut(s) 810
Sse9I AATT 7 cut(s) 142, 543, 705, 753, 885, 1029, 1048
SsiI CCGC 4 cut(s) 376, 996, 1110, 1113
SspI AATATT 3 cut(s) 396, 459, 495
SspMI CTAG 1 cut(s) 788
StyD4I CCNGG 2 cut(s) 166, 511
StyI CCWWGG 1 cut(s) 1191
TaaI ACNGT 5 cut(s) 195, 474, 583, 672, 1207
TaiI ACGT 1 cut(s) 651
TasI AATT 7 cut(s) 142, 543, 705, 753, 885, 1029, 1048
TatI WGTACW 2 cut(s) 417, 949
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 6 cut(s) 47, 491, 542, 750, 1209, 1215
Tru9I TTAA 6 cut(s) 47, 491, 542, 750, 1209, 1215
TscAI CASTG 4 cut(s) 205, 750, 804, 817
TseFI GTSAC 2 cut(s) 226, 535
TseI GCWGC 6 cut(s) 203, 504, 507, 662, 791, 986
Tsp45I GTSAC 2 cut(s) 226, 535
TspDTI ATGAA 3 cut(s) 261, 288, 1148
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 4 cut(s) 205, 750, 804, 817
XapI RAATTY 2 cut(s) 142, 1048
XceI RCATGY 1 cut(s) 810
XspI CTAG 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.