Prupe.6G004300_v2.0.a1

sodium metabolite cotransporter BASS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022463
Physical Location & Seq
Reverse (-)
437483 .. 439110
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G004300.1

Sequence Viewer

Length: 492 bp
ATGACGGTATGCACAACTCTTGGGGCAGTATCCCTGCCTCCTCTACTAACAAAGATATTGGCTGGGACTTACGTCCCTGTGGATGCTGCCAAACTGTCAATCAGCACCATGCAGCTGGGCCGTATGGTCTCTATTCTGTCATCTGTAGGTCGTTGTTGCTCCAATTTGTTAGGTTCTTATATGCAGAGTGCATTTCCTGCAGTGGTTAAAATTGTGATACCTTTTGCACCACTTTTTGTTGTTCTAGCTGCATCACTGCTTGCATGCAGTGTATTCTCTGAGAATGTTGTCCGTCTCAAAGCTTCAATGGTAGGTATGAAAAATTCTTCTTTGGGTGTGGTTTTGGCCACTTCTCATTTCACCTCGCCGATGGTTGCATTACCCACAGCATTGTTTGCTGTGATTATGAATATAATGGGAAGCAGTCTGGCATTCTTTTGGAGATATGTAGATCCTTCTGACTCCAAGGAGACTCCTACAGTTGAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBF

Protein Analysis

164

Amino Acids

17.18

Weight (kDa)

9.05

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022463)

Species Orthologous Gene IDs
prunus_persica Prupe.1G578600_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.6G004300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 322
AgsI TTSAA 1 cut(s) 306
AluBI AGCT 3 cut(s) 115, 248, 302
AluI AGCT 3 cut(s) 115, 248, 302
Alw26I GTCTC 3 cut(s) 133, 299, 464
AlwI GGATC 1 cut(s) 446
AoxI GGCC 2 cut(s) 118, 345
ApeKI GCWGC 3 cut(s) 86, 112, 248
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 352
BalI TGGCCA 1 cut(s) 347
BbvI GCAGC 3 cut(s) 73, 124, 235
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 105
BciVI GTATCC 1 cut(s) 40
BcoDI GTCTC 3 cut(s) 133, 299, 464
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 3 cut(s) 144, 198, 477
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 3 cut(s) 87, 113, 249
BlsI GCNGC 3 cut(s) 88, 114, 250
BmgT120I GGNCC 1 cut(s) 118
BmsI GCATC 2 cut(s) 73, 260
BoxI GACNNNNGTC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 73, 124, 235
BseYI CCCAGC 2 cut(s) 62, 115
BshFI GGCC 2 cut(s) 120, 347
BslFI GGGAC 2 cut(s) 59, 79
BsmAI GTCTC 3 cut(s) 133, 299, 464
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 59, 79
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 2 cut(s) 120, 347
Bso31I GGTCTC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 451
BspANI GGCC 2 cut(s) 120, 347
BspCNI CTCAG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 7, 96, 481
BstAPI GCANNNNNTGC 2 cut(s) 197, 395
BstC8I GCNNGC 2 cut(s) 261, 265
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 3 cut(s) 133, 299, 464
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 197, 395
BstNSI RCATGY 1 cut(s) 267
BstPAI GACNNNNGTC 1 cut(s) 71
BstSFI CTRYAG 3 cut(s) 144, 198, 477
BstV1I GCAGC 3 cut(s) 73, 124, 235
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 451
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 120, 347
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 3 cut(s) 207, 254, 274
BtsIMutI CAGTG 3 cut(s) 207, 254, 274
Cac8I GCNNGC 2 cut(s) 261, 265
Cfr13I GGNCC 1 cut(s) 118
CviAII CATG 2 cut(s) 109, 264
CviJI RGCY 6 cut(s) 62, 115, 120, 248, 302, 347
CviKI_1 RGCY 6 cut(s) 62, 115, 120, 248, 302, 347
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 2 cut(s) 112, 267
FaqI GGGAC 2 cut(s) 59, 79
FatI CATG 2 cut(s) 108, 263
Fnu4HI GCNGC 3 cut(s) 87, 113, 249
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 87, 113, 249
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 87, 113, 249
GsaI CCCAGC 2 cut(s) 66, 119
HaeIII GGCC 2 cut(s) 120, 347
Hin1II CATG 2 cut(s) 112, 267
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 2 cut(s) 461, 472
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 280, 460
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 3 cut(s) 7, 96, 481
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 395
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 112, 267
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 6 cut(s) 47, 48, 90, 101, 210, 413
Lsp1109I GCAGC 3 cut(s) 73, 124, 235
LweI GCATC 2 cut(s) 73, 260
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 72
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 1 cut(s) 318
MflI RGATCY 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 3 cut(s) 163, 210, 322
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 2 cut(s) 455, 466
MnlI CCTC 4 cut(s) 48, 51, 373, 478
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MseI TTAA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 197, 395
NdeII GATC 1 cut(s) 451
NlaIII CATG 2 cut(s) 112, 267
NspI RCATGY 1 cut(s) 267
PaeI GCATGC 1 cut(s) 267
PctI GAATGC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 88, 114, 250
PleI GAGTC 2 cut(s) 455, 466
PpsI GAGTC 2 cut(s) 455, 466
PshAI GACNNNNGTC 1 cut(s) 71
PspFI CCCAGC 2 cut(s) 62, 115
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 87, 113, 249
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 455, 466
SfaNI GCATC 2 cut(s) 73, 260
SfcI CTRYAG 3 cut(s) 144, 198, 477
SphI GCATGC 1 cut(s) 267
Sse9I AATT 3 cut(s) 163, 210, 322
SspMI CTAG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 7, 96, 481
TaiI ACGT 1 cut(s) 75
TasI AATT 3 cut(s) 163, 210, 322
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 207, 261, 274
TseI GCWGC 3 cut(s) 86, 112, 248
TspDTI ATGAA 2 cut(s) 332, 422
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 3 cut(s) 207, 261, 274
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 267
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.