Prupe.5G099300_v2.0.a1

sodium metabolite cotransporter BASS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0022463
Physical Location & Seq
Forward (+)
10746326 .. 10747958
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G099300.2

Sequence Viewer

Length: 573 bp
ATGACGGTATGCACAACTCTTGGGGCAGTAGCCCTGCCTCCTATTGGCAGGGACTTACGTCCCTGTGGATGCTGCCAAACTGTCAATCAGCACCATGCAGGTTCTTATATGCAGAGTGCATTTCCTGCAGTGGTTAAAATTGTGATACCTTTTGCACCACTTTTTGCTGTTCTAGCTGCATCACTGCTTGCATGCAGCTCAATGGTTGCTGTAACATTGCCGGCTGATCTGTCTCTAATGGCTCATGCTCGGACAGTGTTATCTGGAGAAGTTGGGGTGGTTATTCTTTCTCTGCTGTTAGTACATATTGCTGGTTTCTTTGTGGGGTATATATCAGCAGCTGTTTGCGGGTTTAGAGAAGCACAAAGACGAGCAATATCAATTGAGGTGGGTATACAAAATTCTTCTTTGGGTGTGGTTTTGGCCACTTCTCATTTCACCTCGCCGATGGTTGCATTACCCGCAGCATTGTCTGCTGTGATTATGAACATAATGGGAAGCAGTCTGGCATTCTTTTGGAGATATGTAGATCCTTTTGACTCCAAGGAGACTCCTACAGTTGAGGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBF

Protein Analysis

191

Amino Acids

19.95

Weight (kDa)

7.66

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022463)

Species Orthologous Gene IDs
prunus_persica Prupe.1G578600_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.5G099300_v2.0.a1 Prupe.6G004300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 394
AciI CCGC 2 cut(s) 348, 462
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 44
AluBI AGCT 3 cut(s) 176, 198, 341
AluI AGCT 3 cut(s) 176, 198, 341
Alw26I GTCTC 2 cut(s) 237, 542
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 5 cut(s) 72, 176, 195, 338, 464
ApoI RAATTY 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 430
BalI TGGCCA 1 cut(s) 425
BbvI GCAGC 5 cut(s) 59, 163, 207, 350, 476
BccI CCATC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 237, 542
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 126, 555
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 5 cut(s) 73, 177, 196, 339, 465
BlsI GCNGC 5 cut(s) 74, 178, 197, 340, 466
BmsI GCATC 2 cut(s) 59, 188
BoxI GACNNNNGTC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 543
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 215
BseXI GCAGC 5 cut(s) 59, 163, 207, 350, 476
BshFI GGCC 1 cut(s) 425
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 45, 65
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 237, 542
BsmFI GGGAC 2 cut(s) 45, 65
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 226, 529
BspACI CCGC 2 cut(s) 348, 462
BspANI GGCC 1 cut(s) 425
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 2 cut(s) 226, 529
BssNAI GTATAC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 543
Bst1107I GTATAC 1 cut(s) 395
Bst4CI ACNGT 4 cut(s) 7, 82, 256, 559
BstAPI GCANNNNNTGC 2 cut(s) 125, 473
BstC8I GCNNGC 3 cut(s) 189, 193, 222
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 2 cut(s) 229, 532
BstMAI GTCTC 2 cut(s) 237, 542
BstMBI GATC 2 cut(s) 226, 529
BstMWI GCNNNNNNNGC 4 cut(s) 125, 173, 461, 473
BstNSI RCATGY 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 57
BstSFI CTRYAG 2 cut(s) 126, 555
BstV1I GCAGC 5 cut(s) 59, 163, 207, 350, 476
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BstZ17I GTATAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 2 cut(s) 135, 182
BtsIMutI CAGTG 3 cut(s) 135, 182, 261
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 3 cut(s) 189, 193, 222
CaiI CAGNNNCTG 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 220
Csp6I GTAC 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 3 cut(s) 95, 192, 245
CviJI RGCY 7 cut(s) 32, 176, 198, 224, 242, 341, 425
CviKI_1 RGCY 7 cut(s) 32, 176, 198, 224, 242, 341, 425
CviQI GTAC 1 cut(s) 302
DpnI GATC 2 cut(s) 228, 531
DpnII GATC 2 cut(s) 226, 529
EaeI YGGCCR 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 3 cut(s) 98, 195, 248
FaqI GGGAC 2 cut(s) 45, 65
FatI CATG 3 cut(s) 94, 191, 244
FauI CCCGC 2 cut(s) 341, 469
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 73, 177, 196, 339, 465
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 73, 177, 196, 339, 465
FspBI CTAG 1 cut(s) 173
GluI GCNGC 5 cut(s) 73, 177, 196, 339, 465
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 425
HapII CCGG 1 cut(s) 221
Hin1II CATG 3 cut(s) 98, 195, 248
HinfI GANTC 2 cut(s) 539, 550
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 395
HpyCH4III ACNGT 4 cut(s) 7, 82, 256, 559
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 173, 461, 473
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 98, 195, 248
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 226, 529
LpnPI CCDG 9 cut(s) 34, 47, 76, 84, 138, 234, 249, 297, 491
Lsp1109I GCAGC 5 cut(s) 59, 163, 207, 350, 476
LweI GCATC 2 cut(s) 59, 188
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 228, 531
MboI GATC 2 cut(s) 226, 529
MboII GAAGA 1 cut(s) 396
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 529
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 3 cut(s) 138, 381, 400
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 2 cut(s) 533, 544
MnlI CCTC 4 cut(s) 48, 379, 451, 556
Mox20I TGGCCA 1 cut(s) 425
MroNI GCCGGC 1 cut(s) 220
MscI TGGCCA 1 cut(s) 425
MseI TTAA 2 cut(s) 135, 567
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 125, 173, 461, 473
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 2 cut(s) 226, 529
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 3 cut(s) 98, 195, 248
NspI RCATGY 1 cut(s) 195
PaeI GCATGC 1 cut(s) 195
PctI GAATGC 1 cut(s) 509
PdiI GCCGGC 1 cut(s) 222
PkrI GCNGC 5 cut(s) 74, 178, 197, 340, 466
PleI GAGTC 2 cut(s) 533, 544
PpsI GAGTC 2 cut(s) 533, 544
PshAI GACNNNNGTC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 135, 567
SatI GCNGC 5 cut(s) 73, 177, 196, 339, 465
Sau3AI GATC 2 cut(s) 226, 529
SchI GAGTC 2 cut(s) 533, 544
SetI ASST 9 cut(s) 61, 103, 151, 178, 200, 343, 390, 443, 567
SfaNI GCATC 2 cut(s) 59, 188
SfcI CTRYAG 2 cut(s) 126, 555
SphI GCATGC 1 cut(s) 195
Sse9I AATT 3 cut(s) 138, 381, 400
SsiI CCGC 2 cut(s) 348, 462
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 4 cut(s) 7, 82, 256, 559
TaiI ACGT 1 cut(s) 61
TasI AATT 3 cut(s) 138, 381, 400
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 2 cut(s) 135, 567
Tru9I TTAA 2 cut(s) 135, 567
TscAI CASTG 3 cut(s) 135, 189, 261
TseI GCWGC 5 cut(s) 72, 176, 195, 338, 464
TspDTI ATGAA 1 cut(s) 500
TspRI CASTG 3 cut(s) 135, 189, 261
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.