Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0022443

Physical Location & Seq

Genomic Coordinates Forward (+)

9686722 .. 9691872

Gene Structure 5151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGGAAAACACTCTTCTGGCAGGAATTGGATACTGGATTAGAAAAACAATGGGTCGATGCACAGATAAGAAACAAAAACAAAGAGCTATATACCCCTCCTCTGGAAATTCCACACAAAGAAACTTTCCAAATGAAAAGCTCCCTAAGGGCCAAGAGAAGAAAATTGTTCAAGGGAGACAAGTGCTTGCAAACCCCAGTACTCTCCCAGAATTGCAAGCTGTCATTAGCTTAGATGCTCCTGCAGTTGAGAGTATTATGCCGTCAGACGCAAGTTGTGAAGACATTGAGATTGATAAAAGCCTTTCATTCCTCAATGGCTATGTCCAACAAGCACTGGAGAAAGGTGCTCAGCCCTATATTCCCGAGAATGAGCGCTCTGGAATGTTAAATATCAGCAACTTCAGTAACCAAGATCAGCATGAAGCTTTAACCCATGAAGACGACGTTATTGATACCTACTACGTCGCACATATAAACACAACCGTCGTACAATTAATTTTCCACTTCGATTTTTTGATAAAAGATGACGTGGAAATAGTTGTCAGTGTCATTATTTACGACGTATGTGTTTCTATAGTAGACGTTGAAAAACTAAACAACGTCAGTTACAAATATATGAGAGTCGTATTAAAAAATTTATACGTCCTATTTTCAGAAACAAACAACGACCATAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0030117 GO:0030119 GO:0030124 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048475 GO:0055044 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N

Protein Analysis

228

Amino Acids

25.74

Weight (kDa)

5.15

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022443)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G067900_v2.0.a1 Prupe.6G199200_v2.0.a1 Prupe.6G199900_v2.0.a1 Prupe.6G200100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	109, 637
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	2 cut(s)	202, 492
AfeI	AGCGCT	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	173, 590
AjiI	CACGTC	1 cut(s)	532
AluBI	AGCT	5 cut(s)	89, 142, 221, 231, 428
AluI	AGCT	5 cut(s)	89, 142, 221, 231, 428
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	377
AoxI	GGCC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	109, 637
AseI	ATTAAT	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	288, 447
Bbv12I	GWGCWC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	172
BfmI	CTRYAG	2 cut(s)	243, 576
BfoI	RGCGCY	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	351
BmcAI	AGTACT	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	50, 226
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	2 cut(s)	288, 447
BpmI	CTGGAG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	41, 198, 342
Bse21I	CCTNAGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	3 cut(s)	41, 198, 342
BseRI	GAGGAG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	415
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	41, 198, 342
BssMI	GATC	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	189, 219
BstDEI	CTNAG	3 cut(s)	147, 232, 351
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	415
BstSFI	CTRYAG	2 cut(s)	243, 576
BstV2I	GAAGAC	2 cut(s)	288, 447
Bsu36I	CCTNAGG	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	335, 553
Cac8I	GCNNGC	2 cut(s)	189, 219
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	201, 491
CviAII	CATG	2 cut(s)	422, 437
CviJI	RGCY	9 cut(s)	89, 142, 153, 221, 231, 303, 321, 355, 428
CviKI_1	RGCY	9 cut(s)	89, 142, 153, 221, 231, 303, 321, 355, 428
CviQI	GTAC	2 cut(s)	201, 491
DdeI	CTNAG	3 cut(s)	147, 232, 351
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	365
FaeI	CATG	2 cut(s)	425, 440
FatI	CATG	2 cut(s)	421, 436
FblI	GTMKAC	1 cut(s)	582
GlaI	GCGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	425, 440
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	1 cut(s)	624
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	268, 658
Hpy188III	TCNNGA	3 cut(s)	105, 365, 381
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	4 cut(s)	449, 470, 491, 566
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	7 cut(s)	447, 465, 531, 564, 585, 603, 645
HpyCH4V	TGCA	4 cut(s)	63, 191, 217, 245
HpyF3I	CTNAG	3 cut(s)	147, 232, 351
HpySE526I	ACGT	7 cut(s)	447, 465, 531, 564, 585, 603, 645
Hsp92II	CATG	2 cut(s)	425, 440
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	147, 244
LpnPI	CCDG	9 cut(s)	5, 9, 22, 90, 211, 222, 255, 323, 366
LweI	GCATC	2 cut(s)	50, 226
MaeII	ACGT	7 cut(s)	447, 465, 531, 564, 585, 603, 645
MaeIII	GTNAC	2 cut(s)	407, 608
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	8, 172, 293, 452
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	27, 109, 165, 212, 494, 498, 637
MlyI	GAGTC	1 cut(s)	633
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	3 cut(s)	109, 112, 323
MseI	TTAA	4 cut(s)	389, 431, 497, 632
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	425, 440
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PshBI	ATTAAT	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	202, 492
RsaNI	GTAC	2 cut(s)	201, 491
SaqAI	TTAA	4 cut(s)	389, 431, 497, 632
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	50, 226
SfcI	CTRYAG	2 cut(s)	243, 576
Sse9I	AATT	7 cut(s)	27, 109, 165, 212, 494, 498, 637
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	680
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	7 cut(s)	450, 468, 534, 567, 588, 606, 648
TaqI	TCGA	2 cut(s)	58, 510
TasI	AATT	7 cut(s)	27, 109, 165, 212, 494, 498, 637
TatI	WGTACW	1 cut(s)	200
Tru1I	TTAA	4 cut(s)	389, 431, 497, 632
Tru9I	TTAA	4 cut(s)	389, 431, 497, 632
TscAI	CASTG	2 cut(s)	342, 553
TspDTI	ATGAA	4 cut(s)	150, 297, 438, 453
TspRI	CASTG	2 cut(s)	342, 553
VspI	ATTAAT	1 cut(s)	497
XapI	RAATTY	2 cut(s)	109, 637
XmiI	GTMKAC	1 cut(s)	582
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.